New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1752267 =	75 (1.030)	7 (0.100)	6/236	NT	9.0%	coding (632/705 nt)	PP_1552	replication protein
	?	NC_002947	1752290 =	70 (1.010)					coding (655/705 nt)	PP_1552	replication protein

TGCCGTTGCACACACCCGGGATGCGCACCTGGCACTCCCGGCCGCGCGCGGCCTTGGTCAGCTTGGTTTGCCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCC‑GCCCTCGCGCAGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1752418‑1752267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAAGGAGGAGTTCTGACCATGCGGCAAACCAAGCTGACCAAGGCCGCGCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGTGTGTGCAACGGCAACCCCGAAACCACGGTCCTC  >  NC_002947/1752290‑1752438                                                                                                                                                                                                                                                                                                                TGCCGTTGCACACACCCGGGATGCGCACCTGGCACTCCCGGCCGCGCGCGGCCTTGGTCAGCTTGGTTTGCCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCC‑GCCCTCGCGCAGGCG                                                                                                                                                         <  1:522365/150‑1  GCCGTTGCACACACCCGGGATGCGCACCTGGCACTCCCGGCCGCGCGCGGCCTTGGTCAGCTTGGTTTGCCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCC‑GCCCTCGCGCAGGCGG                                                                                                                                                        <  2:146774/150‑1   CCGTTGCACACACCCGGGATGCGCACCTGGCACTCCCGGCCGCGCGCGGCCTTGGTCAGCTTGGTTTGCCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCC‑GCCCTCGCGCAGGCGGT                                                                                                                                                       <  1:1668597/150‑1                                      CCGGCCGCGCGCGGCCTTGGTCAGCTTGGTTTGCCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCCTGCGCGAGGGC‑GGCGGTGTGGTGGTGCCCTTCGAGTG                                                                                                                                   >  1:1129536/1‑135                                      CCGGCCGCGCGCGGCCTTGGTCAGCTTGGTTTGCCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCCTGCGCGAGGGC‑GGCGGTGTGGTGGTGCCCTTCGAGTG                                                                                                                                   <  2:1129536/135‑1                                                                       CCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCC‑GCCCTCGCGCAGGCGG                                                                                                                                                        >  1:1033486/1‑81                                                                       CCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCC‑GCCCTCGCGCAGGCGG                                                                                                                                                        <  2:1033486/81‑1                                                                                                                              CCACACCGCC‑GCCCTCGCGCAGGCGGTGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAAGGAGGAGTTCTGACCATGCGGCAAACCAAGCTGACCAAGGCCGCGCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGTGTGTGCA                            >  2:1162859/1‑150                                                                                                                              CCACACCGCC‑GCCCTCGCGCAGGCGGTGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAAGGAGGAGTTCTGACCATGCGGCAAACCAAGCTGACCAAGGCCGCGCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGTGT                                 >  1:619671/1‑145                                                                                                                              CCACACCGCC‑GCCCTCGCGCAGGCGGTGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAAGGAGGAGTTCTGACCATGCGGCAAACCAAGCTGACCAAGGCCGCGCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGTGT                                 <  2:619671/145‑1                                                                                                                               CACACCGCC‑GCCCTCGCGCAGGCGGTGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAA                                                                                                                 >  1:533550/1‑64                                                                                                                               CACACCGCC‑GCCCTCGCGCAGGCGGTGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAA                                                                                                                 <  2:533550/64‑1                                                                                                                                                    GGCGGTGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAAGGAGGAGTTCTGACCATGCGGCAAACCAAGCTGACCAAGGCCGCGCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGTGTGTGCAACGGCAACCCCGAAACCACGG       <  2:1162797/150‑1                                                                                                                                                         TGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAAGGAGGAGTTCTGACCATGCGGCAAACCAAGCTGACCAAGGCCGCGCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGTGTGTGCAACGGCAACCCCGAAACCACGGTCCTC  <  1:62409/150‑1                                                                                                                                                                                                                                                                                                                TGCCGTTGCACACACCCGGGATGCGCACCTGGCACTCCCGGCCGCGCGCGGCCTTGGTCAGCTTGGTTTGCCGCATGGTCAGAACTCCTCCTTGCCACGGTGAGACTCCCACTCGAAGGGCACCACCACACCGCC‑GCCCTCGCGCAGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1752418‑1752267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtGTGGTGGTGCCCTTCGAGTGGGAGTCTCACCGTGGCAAGGAGGAGTTCTGACCATGCGGCAAACCAAGCTGACCAAGGCCGCGCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGTGTGTGCAACGGCAACCCCGAAACCACGGTCCTC  >  NC_002947/1752290‑1752438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.