New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1800371	67 (0.920)	4 (0.060)	4/236	NT	5.6%	coding (313/3525 nt)	dnaEA	DNA polymerase III subunit alpha
	?	NC_002947	= 1800401	71 (1.020)					coding (343/3525 nt)	dnaEA	DNA polymerase III subunit alpha

AAGACTGCCATGGGCGCCGGCATCAAACCGATCTGCGGTGCCGACCTGTGGCTGGCCGGTGCCGACCCGGAAGCCCCGCTGTCGCGCATCTGCTTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1800218‑1800371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggaGGATGACCAGGCCATTGCGCTGGCCATCGGTCCAGCCGCGCGAGATCAGTTCGGTGAGGTT  <  NC_002947/1800401‑1800341                                                                                                                                                                                                                         AAGACTGCCATGGGCGCCGGCATCAAACCGATCTGCGGTGCCGACCTGTGGCTGGCCGGTGCCGACCCGGAAGCCCCGCTGTCGCGCATCTGCTTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGC                                                                   <  1:1427736/150‑1   GACTGCCATGGGCGCCGGCATCAAACCTATCTGCGGTGCCGACCTGTGGCTGGCCGGTGCCGACCCGGAAGCCCCGCTGTCGCGCATCTGCTTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGCTG                                                                 <  2:1766602/150‑1                                                                GACCCGGAAGCCCCGCTGTCGCGCATCTGCTTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGCTGGAGGATGACCAGGCCATTGCGCTGGCCATCGGTCCAGCCGCGC                      <  1:1002145/132‑1                                                                GACCCGGAAGCCCCGCTGTCGCGCATCTGCTTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGCTGGAGGATGACCAGGCCATTGCGCTGGCCATCGGTCCAGCCGCGC                      >  2:1002145/1‑132                                                                                              TTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGCTGGAGGATGACCAGGCCATTGCGCTGGCCATCGGTCCAGCCGCGCGAGATCAGTTCGGTGAGGTT  <  1:1025684/122‑1                                                                                              TTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGCTGGAGGATGACCAGGCCATTGCGCTGGCCATCGGTCCAGCCGCGCGAGATCAGTTCGGTGAGGTT  >  2:1025684/1‑122                                                                                                                                                                                                                         AAGACTGCCATGGGCGCCGGCATCAAACCGATCTGCGGTGCCGACCTGTGGCTGGCCGGTGCCGACCCGGAAGCCCCGCTGTCGCGCATCTGCTTCCTGGCCATGGACCCCAAGGGCTATCGCAACCTCACCGAACTGATCTCGCGCGGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1800218‑1800371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggaGGATGACCAGGCCATTGCGCTGGCCATCGGTCCAGCCGCGCGAGATCAGTTCGGTGAGGTT  <  NC_002947/1800401‑1800341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.