New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1842441 | 76 (1.040) | 4 (0.060) | 4/234 | NT | 5.5% | coding (2395/2754 nt) | gacS | sensor protein GacS |
? | NC_002947 | = 1842465 | 65 (0.940) | coding (2371/2754 nt) | gacS | sensor protein GacS |
CGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1842287‑1842441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCC < NC_002947/1842465‑1842321 CGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCG < 1:539977/150‑1 GGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGC < 2:1844100/150‑1 CGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCT < 2:930056/150‑1 ATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCT < 1:1847472/83‑1 ATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCT > 2:1847472/1‑83 GCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGG > 1:951376/1‑108 GCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGG < 2:951376/108‑1 CTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGA > 1:1226076/1‑92 CTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGA < 2:1226076/92‑1 ggggaaCGGCATGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCT < 2:110985/144‑1 GGCCTGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCC < 2:868928/150‑1 GCCTGAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCC > 2:1882234/1‑150 CGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1842287‑1842441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgAGCCTGGGCACACCGCAGCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCC < NC_002947/1842465‑1842321 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |