| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2274386 | 100 (1.370) | 5 (0.070) | 4/238 | NT | 5.0% | coding (24/1041 nt) | PP_2004 | AraC family transcriptional regulator |
| ? | NC_002947 | = 2274398 | 94 (1.340) | coding (12/1041 nt) | PP_2004 | AraC family transcriptional regulator | |||||
CATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCGCTCAGGCGGGTCGCGTCCAGGCCGTAGCGGCGCAGCAATGGTTCAGGGTCGTGGCCCAGCTCGCGCAGGGCTTCGCTCAAAGGCTGGACAAAACCAACCGACAGTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2274233‑2274386‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccCCGCGTGCGCCTGGGCGAACTGTCGGTTGGTTTTGTCCAGCCTTTGAGCGAAGCCCT < NC_002947/2274398‑2274342 CATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCGCTCAGGCGGGTCGCGTCCAGGCCGTAGCGGCGCAGCAATGGTTCAGGGTCGTGGCCCAGCTCGCGCAGGGCTTCGCTCAAAGGCTGGACAAAACCAACCGACAGTTC < 2:926022/150‑1 GTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCGCTCAGGCGGGTCGCGTCCAGGCCGTAGCGGCGCAGCAATGGTTCAGGGTCGTGGCCCAGCTCGCGCAGGGCTTCGCTCAAAGGCTGGACAAAACCAACCGACAGTTCGCC > 1:644355/1‑150 GCGTGCGCCGGCTTCGCTCAGGCGGGTCGCGTCCAGGCCGTAGCGGCGCAGCAATGGTTCAGGGTCGTGGCCCAGCTCGCGCAGGGCTTCGCTCAAAGGCTGGACAAAACCAACCGACAGTTCGCCCCCGCGTGCGCCTGGGCGAACTGT < 2:1267987/150‑1 CCAGCTCGCGCAGGGCTTCGCTCAAAGGCTGGACAAAACCAACCGACAGTTCGCCCCCGCGTGCGCCTGGGCGAACTGT < 1:1450459/79‑1 CCAGCTCGCGCAGGGCTTCGCTCAAAGGCTGGACAAAACCAACCGACAGTTCGCCCCCGCGTGCGCCTGGGCGAACTGT > 2:1450459/1‑79 AAAGGCTGGACAAAACCAACCGACAGTTCGCCCCCGCGTGCGCCTGGGCGAA < 1:132544/52‑1 AAAGGCTGGACAAAACCAACCGACAGTTCGCCCCCGCGTGCGCCTGGGCGAA > 2:132544/1‑52 CCCCCGCGTGCGCCTGGGCGAACTGTCGGTTGGTTTTGTCCAGCCTTTGAGCGAAGCCCT > 1:12125/1‑60 CCCCCGCGTGCGCCTGGGCGAACTGTCGGTTGGTTTTGTCCAGCCTTTGAGCGAAGCCCT < 2:12125/60‑1 CATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCGCTCAGGCGGGTCGCGTCCAGGCCGTAGCGGCGCAGCAATGGTTCAGGGTCGTGGCCCAGCTCGCGCAGGGCTTCGCTCAAAGGCTGGACAAAACCAACCGACAGTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2274233‑2274386‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccCCGCGTGCGCCTGGGCGAACTGTCGGTTGGTTTTGTCCAGCCTTTGAGCGAAGCCCT < NC_002947/2274398‑2274342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |