New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2577388	64 (0.880)	6 (0.090)	6/238	NT	8.7%	coding (1050/1776 nt)	PP_2259	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 2577405	64 (0.910)					coding (1033/1776 nt)	PP_2259	sigma‑54 dependent transcriptional regulator

AATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2577235‑2577388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcAGCCGCGCCAG‑GCAGCCGCTGGTCGCCGTAAACTGTGCGGCGATCCCGGCCGAACTGGTGGAGTCGGAACTGTTCGGCTATGACAAAGGCGCGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACG  <  NC_002947/2577405‑2577258                                                                                                                                                                                                                                                                                                                 AATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGAC                                                                                                                                                           >  1:1915899/1‑150    CTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGACCGAGCGTTTGTTATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGACCAG                                                                                                                                                        <  2:375542/150‑1           AGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGAC                                                                                                                                                           >  1:111546/1‑140           AGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGAC                                                                                                                                                           <  2:111546/140‑1                          TGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGAC‑‑‑CAGCCGCGCCAG‑GCAGCCGCTGGTC                                                                                                                              <  1:1639050/150‑1                                   TTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGACCAGCAGCCGCGCCAG‑GCAGCCGCTG                                                                                                                                 >  1:1479971/1‑141                                   TTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGACCAGCAGCCGCGCCAG‑GCAGCCGCTG                                                                                                                                 <  2:1479971/141‑1                                                                             AACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGACCAGCAGCCGCGCCAG‑GCAGCCGCTGGTCGCCGTAAACT                                                                                                                    <  1:1680863/112‑1                                                                                                                                     CGCACAGTTTACGGCGACCAGCGGCTGC‑CTGGCGCGGCTGCTGGTCGCCGTAAACTGTGCGGCGATCCCGGCCGAACTGGTGGAGTCGGAACTGTTCGGCTATGACAAAGGCGCGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACT                      >  2:1369729/1‑150                                                                                                                                          AGTTTACGGCGACCAGCGGCTGC‑CTGGCGCGGCTGCTGGTCGCCGTAAACTGTGCGGCGATCCCGGCCGAACTGGTGGAGTCGGAACTGTTCGGCTATGACAAAGGCGCGTT                                                       <  2:1680863/112‑1                                                                                                                                                       CAGCAGCCGCGCCAG‑GCAGCCGCTGGTCGCCGTAAACTGTGCGGCGATCCCGGCCGAACTGGTGGAGTCGGAACTGTTCGGCTATGACAAAGGCGCGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCA    <  2:1899078/150‑1                                                                                                                                                         GCAGCCGCGCCAG‑GCAGCCGCTGGTCGCCGTAAACTGTGCGGCGATCCCGGCCGAACTGGTGGAGTCGGAACTGTTCGGCTATGACAAAGGCGCGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACG  >  1:1340743/1‑150                                                                                                                                                                                                                                                                                                                 AATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAGTTTACGGCGACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2577235‑2577388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcAGCCGCGCCAG‑GCAGCCGCTGGTCGCCGTAAACTGTGCGGCGATCCCGGCCGAACTGGTGGAGTCGGAACTGTTCGGCTATGACAAAGGCGCGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACG  <  NC_002947/2577405‑2577258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.