New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 288957874 (1.010)4 (0.060) 4/238 NT 5.2% coding (543/1413 nt) gabP‑II gamma‑aminobutyrate permease
?NC_002947 = 2889591 74 (1.060)coding (556/1413 nt) gabP‑II gamma‑aminobutyrate permease

GACGTCAGCGTCAACGTGTTCGTGCTGGCCACAACCCTGTTGCTGATCACCGTCAACTTCTTCAACGTCAAGCACTACGGTGAGTTCGAGTTCTGGTTCGCCTTGATCAAGGTGATTGCGATCGTCTGCTTCCTGATCGTGTGTACGGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2889426‑2889578
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcc‑AGATGTTCATCACGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACCAGAACTCGAACTCACCGTAGTGCTTGACGTTGAAGAAGTTGACGGTGATCAGCAACAGGGTTGTGGCCAGCACGAAC  <  NC_002947/2889591‑2889443
                                                                                                                                                                                                                                                                                                               
GACGTCAGCGTCAACGTGTTCGTGCTGGCCACAACCCTGTTGCTGATCACCGTCAACTTCTTCAACGTCAAGCACTACGGTGAGATCGAGTTCTGGTTCGCCTTGATCAAGGTGATTGCGATCGTCTGCTTCCTGATCGTGTGTACGGCT                                                                                                                                                           >  1:812347/1‑150
                                                                                                                         TCGTCTGCTTCCTGATCGTGTGTACGGCTGCCGTGATGAACATC‑TGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACC                                                                                               >  1:458766/1‑88
                                                                                                                         TCGTCTGCTTCCTGATCGTGTGTACGGCTGCCGTGATGAACATC‑TGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACC                                                                                               <  2:458766/88‑1
                                                                                                                                        TCGTGTGTACGGCTGCCGTGATGAACATC‑TGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACCAGAACTCGAACTCACCGTAGTGCTTGACGTTGAAGAAGTT                                       >  1:1711646/1‑129
                                                                                                                                        TCGTGTGTACGGCTGCCGTGATGAACATC‑TGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACCAGAACTCGAACTCACCGTAGTGCTTGACGTTGAAGAAGTT                                       <  2:1711646/129‑1
                                                                                                                                                       CC‑AGATGTTCATCACGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACCAGAACTCGAACTCACCGTAGTGC                                                        >  1:1759816/1‑97
                                                                                                                                                       CC‑AGATGTTCATCACGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACCAGAACTCGAACTCACCGTAGTGC                                                        <  2:1759816/97‑1
                                                                                                                                                       CC‑AGATGTTCATCACGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACC                                                                               <  1:1830155/74‑1
                                                                                                                                                       CC‑AGATGTTCATCACGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACC                                                                               >  2:1830155/1‑74
                                                                                                                                                        C‑AGATGTTCATCACGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACCAGAACTCGAACTCACCGTAGTGCTTGACGTTGAAGAAGTTGACGGTGATCAGCAACAGGGTTGTGGCCAGCACGAAC  <  2:1906471/150‑1
                                                                                                                                                                                                                                                                                                               
GACGTCAGCGTCAACGTGTTCGTGCTGGCCACAACCCTGTTGCTGATCACCGTCAACTTCTTCAACGTCAAGCACTACGGTGAGTTCGAGTTCTGGTTCGCCTTGATCAAGGTGATTGCGATCGTCTGCTTCCTGATCGTGTGTACGGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2889426‑2889578
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcc‑AGATGTTCATCACGGCAGCCGTACACACGATCAGGAAGCAGACGATCGCAATCACCTTGATCAAGGCGAACCAGAACTCGAACTCACCGTAGTGCTTGACGTTGAAGAAGTTGACGGTGATCAGCAACAGGGTTGTGGCCAGCACGAAC  <  NC_002947/2889591‑2889443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.