New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3355356 =	68 (0.930)	6 (0.090)	6/236	NT	8.4%	coding (519/567 nt)	PP_2951	TetR family transcriptional regulator
	?	NC_002947	3355376 =	66 (0.950)					coding (499/567 nt)	PP_2951	TetR family transcriptional regulator

ACAAAAGCTGCTGGACTACACGCTAGAACTGACCAGCGAATTAGGTGTTAACGATCCGACTGGCTTGGCCAAGCAACTCCTTTTGATTATAGAGGGCACCATAACCGTGGCCCACGTCATGGGTGATCACACCGCGCTCGACAGTGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3355506‑3355356 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCAGTTCTAGCGTGTAGTCCAGCAGCTTTTGTTTATGCAGTTTTGCGA  >  NC_002947/3355376‑3355522                                                                                                                                                                                                                                                                                                            ACAAAAGCTGCGGGACTACACGCTAGAACTGACCAGCGAATTAGGTGTTAACGATCCGACTGGCTTGGCCAAGCAACTCCTTTTGATTATAGAGGGGACCATAACCGTGGCCCACGTCATGAGTTATCACACCGCGCTCGACAGTGCGCG                                                                                                                                                      <  2:304983/150‑1  CAAAAGCTGCTGGACTACACGCTAGAACTGACCAGCGAATTAGGTGTTAACGATCCGACTGGCTTGGCCAAGCAACTCCTTTTGATTATAGAGGGCACCATAACCGTGGCCCACGTCATGGGTGATCACACCGCGCTCGACAGTGCGCGG                                                                                                                                                     >  2:1009087/1‑150                                                                    GCCAAGCAACTCCTTTTGATTATAGAGGGCACCATAACCGTGGCCCACGTCATGGGTGATCACACCGCGCTCGACAGTGCGCGGTGTGATCACCCA                                                                                                                                         <  1:1888979/96‑1                                                                    GCCAAGCAACTCCTTTTGATTATAGAGGGCACCATAACCGTGGCCCACGTCATGGGTGATCACACCGCGCTCGACAGTGCGCGGTGTGATCACCCA                                                                                                                                         >  2:1888979/1‑96                                                                                                                                 ACACCGCGCTCGACAGTGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATC                                                                                                      >  1:1420209/1‑70                                                                                                                                 ACACCGCGCTCGACAGTGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATC                                                                                                      <  2:1420209/70‑1                                                                                                                                  CACCGCGCTCGACAGTGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTC                                                                                                             <  1:107470/62‑1                                                                                                                                  CACCGCGCTCGACAGTGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTC                                                                                                             >  2:107470/1‑62                                                                                                                                                     CGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCCGTTCTAGCGTGTCGTATGTCAGCTTTTGTTTATGCAGTTTTGCGA  <  1:1013730/150‑1                                                                                                                                                                                                                                                                                                            ACAAAAGCTGCTGGACTACACGCTAGAACTGACCAGCGAATTAGGTGTTAACGATCCGACTGGCTTGGCCAAGCAACTCCTTTTGATTATAGAGGGCACCATAACCGTGGCCCACGTCATGGGTGATCACACCGCGCTCGACAGTGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3355506‑3355356 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCAGTTCTAGCGTGTAGTCCAGCAGCTTTTGTTTATGCAGTTTTGCGA  >  NC_002947/3355376‑3355522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.