New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3355356 =	68 (0.930)	6 (0.090)	6/236	NT	8.4%	coding (519/567 nt)	PP_2951	TetR family transcriptional regulator
	?	NC_002947	3355376 =	66 (0.950)					coding (499/567 nt)	PP_2951	TetR family transcriptional regulator

CGCGAGTGAAAGGAGGAAGTGGCGGACGAGTGTGTTCGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCAGTTCTAGCGTGTAGTCCAGCAGCTTTTG  >  NC_002947/3355209‑3355505                                                                                                                                                    |                                                                                                                                                      tcgcaaaactgcataaacaaaagctgacatacgacacgctagaacggaccagcgaattaggtgttaacgatccgactggcttggccaagcaactccttttgattatagagggcaccataaccgtggcccacgtcatgggtgatcacaCcg                                                                                                                                                     <  1:1013730‑M1/3‑1 (MQ=255)   cgAGTGAAAGGAGGAAGTGGCGGACGAGTGTGTTCGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCcgtg                                                                                                                                                   >  2:694149/1‑148 (MQ=255)     aGTGAAAGGAGGAATTGGCGGACGAGTGTGTTCGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCa                                                                                                                                                 <  2:1380056/150‑1 (MQ=255)              aggaAGTGGCGGACGAGTGTGTTCGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAgc                                                                                                                                        <  1:40962/150‑1 (MQ=255)                 aaGTGGCGGACGAGTGTGTTCGTTGGACGTGTGGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCCAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGcgcg                                                                                                                                     <  1:684077/150‑1 (MQ=255)                     ggCGGACGAGTGTGTTCGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGgtgt                                                                                                                                 <  1:881070/150‑1 (MQ=255)                        ggACGAGTGTGTTCGTTGGACATGGTGGTGCTTCCCATCTTGGGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGAt                                                                                                                              <  2:1125214/150‑1 (MQ=255)                          actagagtggTCGTTGGACCTGCTGGTTCCTCAAGTCTTTTGGATGGTTTTGTTGGGTGGGTATTTCTTTAACTTCTAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGTGCGCGGTGTGATCa                                                                                                                            <  2:101985/144‑1 (MQ=255)                                   ttCGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACg                                                                                                                   >  1:1009087/1‑150 (MQ=255)                                     cGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTg                                                                                                                 <  1:646766/150‑1 (MQ=255)                                     cGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTg                                                                                                                 <  2:230489/150‑1 (MQ=255)                                      gTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTgg                                                                                                                >  2:1156334/1‑150 (MQ=255)                                       ttGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTggg                                                                                                               >  1:882594/1‑150 (MQ=255)                                                 tggtgCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTAt                                                                                                     <  1:1324451/150‑1 (MQ=255)                                                  ggtgCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATg                                                                                                    >  1:1380724/1‑150 (MQ=255)                                                    tgCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGt                                                                                                  <  2:1294518/150‑1 (MQ=255)                                                       cTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGcc                                                                                               <  1:63377/150‑1 (MQ=255)                                                       cTCCAATCTTTTGGATGGTTCAGTCGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCCCCCATGACGTGGGCCACGGTTATGGTGcc                                                                                               <  1:408288/150‑1 (MQ=255)                                                          cAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCctc                                                                                            <  2:1622855/150‑1 (MQ=255)                                                           aaTCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCctct                                                                                           >  2:497304/1‑150 (MQ=255)                                                            aTCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCta                                                                                          <  1:1187113/150‑1 (MQ=255)                                                             tCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATg                                                                                                    <  1:847603/139‑1 (MQ=255)                                                             tCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATg                                                                                                    >  2:847603/1‑139 (MQ=255)                                                               ttttGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATaa                                                                                       >  2:1095339/1‑150 (MQ=255)                                                                tttGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTa                                                                                                      >  2:165302/1‑134 (MQ=255)                                                                tttGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTa                                                                                                      <  1:165302/134‑1 (MQ=255)                                                                     aTGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCaaaa                                                                                 >  2:1557669/1‑150 (MQ=255)                                                                      tGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAg                                                                                <  2:882594/150‑1 (MQ=255)                                                                         ttCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAg                                                                             >  1:1433731/1‑150 (MQ=255)                                                                            aGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTa                                                                                                      >  2:1511828/1‑122 (MQ=255)                                                                            aGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTa                                                                                                      <  1:1511828/122‑1 (MQ=255)                                                                                gggtgggtATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGTGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTg                                                                      <  1:694149/150‑1 (MQ=255)                                                                                gggtgggtATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTg                                                                      <  1:497304/150‑1 (MQ=255)                                                                                 ggtgggtATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTgg                                                                     >  1:375823/1‑150 (MQ=255)                                                                                 ggtgggtATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTgg                                                                     <  2:1433731/150‑1 (MQ=255)                                                                                   tgggtATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGt                                                                                                  >  2:1229433/1‑119 (MQ=255)                                                                                   tgggtATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGt                                                                                                  <  1:1229433/119‑1 (MQ=255)                                                                                      gtATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAg                                                                <  1:1156334/150‑1 (MQ=255)                                                                                       tATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGc                                                               >  2:8932/1‑150 (MQ=255)                                                                                         tttCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGa                                                                              >  2:129303/1‑133 (MQ=255)                                                                                         tttCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGa                                                                              <  1:129303/133‑1 (MQ=255)                                                                                            cTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAATGAGTTGCTTGGCCAAGCCAGTc                                                          >  2:507929/1‑150 (MQ=255)                                                                                            cTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTc                                                          <  2:375823/150‑1 (MQ=255)                                                                                             tttAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCg                                                         >  1:1532263/1‑150 (MQ=255)                                                                                                     gattatagagggcaccataaccgtggcccacgtcatgggtgatcacaCCGCGCACTGTCGAGCGCGgtgt                                                                                                                                 <  2:1420209‑M1/23‑1 (MQ=255)                                                                                                     gattatagagggcaccataaccgtggcccacgtcatgggtgatcacaCCGCGCACTGTCGAGCGCGgtgt                                                                                                                                 >  1:1420209‑M1/48‑70 (MQ=255)                                                                                                      aaGCGCTTGCGCGCTGCACGTCCTTGAGCAGGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTg                                                                                                                 >  2:1248178/1‑85 (MQ=255)                                                                                                      aaGCGCTTGCGCGCTGCACGTCCTTGAGCAGGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTg                                                                                                                 >  2:1248197/1‑85 (MQ=255)                                                                                                      aaGCGCTTGCGCGCTGCACGTCCTTGAGCAGGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTg                                                                                                                 <  1:1248197/85‑1 (MQ=255)                                                                                                      aaGCGCTTGCGCGCTGCACGTCCTTGAGCAGGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTg                                                                                                                 <  1:1248178/85‑1 (MQ=255)                                                                                                       aGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCTATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAac                                               <  1:1557669/150‑1 (MQ=255)                                                                                                       aGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAac                                               >  2:1211724/1‑150 (MQ=255)                                                                                                       aGCGCTTGCGCCCTGCACCTCCTTTATCAATACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAac                                               <  2:1380724/150‑1 (MQ=255)                                                                                                        gcgcTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATgg                                                                                                   >  2:483042/1‑97 (MQ=255)                                                                                                        gcgcTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATgg                                                                                                   <  1:483042/97‑1 (MQ=255)                                                                                                        gcgcTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTaaaa                                              <  2:1532263/150‑3 (MQ=255)                                                                                                        gcgcTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAaca                                              >  2:1223794/1‑150 (MQ=255)                                                                                                            gagggcaccataaccgtggcccacgtcatgggtgatcacaCCGCGCACTGTCGAGCGCGgtg                                                                                                                                  >  2:107470‑M1/41‑62 (MQ=255)                                                                                                            gagggcaccataaccgtggcccacgtcatgggtgatcacaCCGCGCACTGTCGAGCGCGgtg                                                                                                                                  <  1:107470‑M1/22‑1 (MQ=255)                                                                                                               cgcccTGCTCGGCCTTGAGTAAGACCTTTGCTATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAAtt                                       <  2:602576/150‑1 (MQ=255)                                                                                                                 cgcTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCg                                     >  2:1013730/1‑150 (MQ=255)                                                                                                                       aCGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGt                                                           <  1:1248833/122‑1 (MQ=255)                                                                                                                       aCGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGt                                                           >  2:1248833/1‑122 (MQ=255)                                                                                                                       aCGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTc                               >  1:1210366/1‑150 (MQ=255)                                                                                                                        cGTCCTTGCGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCa                              <  2:1384811/150‑1 (MQ=255)                                                                                                                        cGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCt                                                                        <  1:1323642/108‑1 (MQ=255)                                                                                                                        cGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCt                                                                        >  2:1323642/1‑108 (MQ=255)                                                                                                                             ttGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGgt                                                                                                                                   >  1:1409166/1‑44 (MQ=255)                                                                                                                             ttGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGgt                                                                                                                                   <  2:1409166/44‑1 (MQ=255)                                                                                                                                        tgggtgatcacaCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGc                                                                    >  2:1888979‑M1/13‑96 (MQ=255)                                                                                                                                        tgggtgatcacaCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGc                                                                    <  1:1888979‑M1/84‑1 (MQ=255)                                                                                                                                        cTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTa                                          <  2:1221901/122‑1 (MQ=255)                                                                                                                                        cTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTa                                          >  1:1221901/1‑122 (MQ=255)                                                                                                                                           tGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCAGTTCTAGCGTGTAGTCcag           <  2:1210366/150‑1 (MQ=255)                                                                                                                                             cGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGc                                                               <  1:614724/96‑1 (MQ=255)                                                                                                                                             cGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGc                                                               >  2:614724/1‑96 (MQ=255)                                                                                                                                                tttCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCAGTTCTAGCGTGTAGTCCAGCAGCt      >  1:1428135/1‑150 (MQ=255)                                                                                                                                                    CCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCAGTTCTAGCGTGTAGTCCAGCAGCTTTTg  >  2:1009087‑M1/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGCGAGTGAAAGGAGGAAGTGGCGGACGAGTGTGTTCGTTGGACATGGTGGTGCCTCCAATCTTTTGGATGGTTCAGTTGGGTGGGTATTTCTTTAACTTCAAGCGCTTGCGCGCTGCACGTCCTTGAGCAAGACCTTTGCGATTTCCCGCGCACTGTCGAGCGCGGTGTGATCACCCATGACGTGGGCCACGGTTATGGTGCCCTCTATAATCAAAAGGAGTTGCTTGGCCAAGCCAGTCGGATCGTTAACACCTAATTCGCTGGTCAGTTCTAGCGTGTAGTCCAGCAGCTTTTG  >  NC_002947/3355209‑3355505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.