New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3581436	47 (0.640)	4 (0.060)	4/236	NT	7.8%	coding (489/942 nt)	PP_3160	hypothetical protein
	?	NC_002947	= 3581450	50 (0.720)					coding (503/942 nt)	PP_3160	hypothetical protein

ATTCAGCCCGGTGCTGATGCGGTTCAATGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3581283‑3581436 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccc‑GCA‑ATGAAGCTGCTGGGCGGATAGTCAACGTGACCAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTGGCCCCCCCATCACCGAACGGGCTCAAGCTGTCTGGCGCATTGAA  <  NC_002947/3581450‑3581305                                                                                                                                                                                                                                                                                                                ATTCAGCCCGGTGCTGATGCGGTTCAATGCGACAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCC                                                                                                                                                          >  1:1115135/1‑150   TCAGCCCGGTGCTGATGCGGTTCAATGCGCCAGATAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGC                                                                                                                                                        <  2:1120865/150‑1                                                                                                                    AGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCA‑GCTTCATTGC‑GGGCGGATAGTCAACGTGACCAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTGGCCCCCCCA                                     >  1:1536825/1‑150                                                                                                                           ACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCA‑TTGC‑GGGCGGATAGTCAACGTGACCAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTG                                              <  1:1449680/134‑1                                                                                                                           ACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCA‑TTGC‑GGGCGGATAGTCAACGTGACCAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTG                                              >  2:1449680/1‑134                                                                                                                               TCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCA‑TTGC‑GGGCGGATAGTCAACGTGACCAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTGGCCCCCCCATCACCGAACGG                          <  2:1536825/150‑1                                                                                                                                                      CGCCC‑GCA‑ATGAAGCTGCTGGGCGGATAGTCAACGTGAACAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTGGCCCCCCCATCACCGAACGGGCTCAAGCTGTCTGGCGCATTGA   >  1:825302/1‑150                                                                                                                                                       GCCC‑GCA‑ATGAAGCTGCTGGGCGGATAGTAAACGTGACCAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTGGCCCCCCCATCACCGAACGGGCTCAAGCTGTCTGGCGCATTGAA  <  1:807339/150‑1                                                                                                                                                                                                                                                                                                                ATTCAGCCCGGTGCTGATGCGGTTCAATGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3581283‑3581436 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccc‑GCA‑ATGAAGCTGCTGGGCGGATAGTCAACGTGACCAGTTGGAACGTGACCACTCGGATCCACTTTGTTCACTGGATCACCCTTGCAATAACAATACGCATTGGCCCCCCCATCACCGAACGGGCTCAAGCTGTCTGGCGCATTGAA  <  NC_002947/3581450‑3581305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.