| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3581436 | 47 (0.640) | 4 (0.060) | 4/236 | NT | 7.8% | coding (489/942 nt) | PP_3160 | hypothetical protein |
| ? | NC_002947 | = 3581450 | 50 (0.720) | coding (503/942 nt) | PP_3160 | hypothetical protein | |||||
TTCAATGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCCCAGCCAGGATAAAACACGC > NC_002947/3581305‑3581594 | ttCAATGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTTACTATCCGCCCAGCAGCTTCAT‑TGCgggc < 1:807339‑M2/150‑5 (MQ=255) tCAATGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGTTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCgggcg > 1:825302‑M2/1‑145 (MQ=255) aTGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGtt < 2:1817783/150‑1 (MQ=255) tGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCAAGTTAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGttt < 1:233994/150‑1 (MQ=255) cAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGtttattta < 1:648345/150‑1 (MQ=255) aGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTAc > 2:798313/1‑150 (MQ=255) cAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCaa < 1:658567/150‑1 (MQ=255) cTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCg > 1:986778/1‑150 (MQ=255) ccGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGa < 2:1524825/150‑1 (MQ=255) ccGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGa < 1:452757/150‑1 (MQ=255) ccGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCC‑GCAA‑TGAAGCTGCtgggcggatagtcaacgtgaccagttgga < 2:1536825‑M2/150‑30 (MQ=255) tGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTc < 2:672731/150‑1 (MQ=255) tGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCC‑GCAATGAAGC‑TGCtgggcggatagtcaacgtgaccagttggaacgtgaccact > 1:1536825‑M2/1‑110 (MQ=255) ggggCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGca < 1:518296/150‑1 (MQ=255) cAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCata > 1:1310357/1‑150 (MQ=255) cAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCC‑GCAA‑TGAAGCTGCtgggcggatagtcaacgtgaccagttggaacgt > 2:1449680‑M2/1‑101 (MQ=255) cAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCC‑GCAA‑TGAAGCTGCtgggcggatagtcaacgtgaccagttggaacgt < 1:1449680‑M2/134‑34 (MQ=255) tATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCAGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTgg > 2:495294/1‑150 (MQ=255) aTTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTggg > 2:244136/1‑150 (MQ=255) gTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGtt < 1:446433/99‑1 (MQ=255) gTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGtt > 2:446433/1‑99 (MQ=255) gTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTAACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATAATATCAGTggggcc > 2:619580/1‑148 (MQ=255) gCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAg < 2:752980/150‑1 (MQ=255) cAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCAGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGcat < 2:96853/128‑1 (MQ=255) cAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCAGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGcat > 1:96853/1‑128 (MQ=255) aTCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGcatca < 2:1307133/122‑1 (MQ=255) aTCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGcatca > 1:1307133/1‑122 (MQ=255) tCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCtt > 2:152964/1‑150 (MQ=255) gTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCCTATCAGTGGGGTCAAAAAGCTCCGGCCTTGagc > 1:81491/1‑148 (MQ=255) tGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTggg < 1:1549821/126‑1 (MQ=255) tGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTggg > 2:1549821/1‑126 (MQ=255) tGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGaaaa < 2:986778/150‑1 (MQ=255) aaCAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATggg < 1:73996/94‑1 (MQ=255) aaCAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATggg > 2:73996/1‑94 (MQ=255) aCAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATTGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAAccc > 2:1928877/1‑150 (MQ=255) gTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGgt < 1:244136/150‑1 (MQ=255) tCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCa > 1:1132911/1‑150 (MQ=255) gAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGaa > 2:1162723/1‑150 (MQ=255) cGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGa < 1:1217802/150‑1 (MQ=255) gTTCCAACTGGTCACGTTTACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATAAAAAAAAAAAAAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGAt < 2:807339/150‑1 (MQ=255) gTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGAt < 1:252218/67‑1 (MQ=255) gTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGAt > 2:252218/1‑67 (MQ=255) ttCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATg > 2:583133/1‑150 (MQ=255) tCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTggg > 1:1652539/1‑98 (MQ=255) tCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTggg < 2:1652539/98‑1 (MQ=255) aaCTGGTCACGTTGACTATCCGCCCATCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGCGCAGAAGGCAGTGGATGAAtt > 2:1744985/1‑150 (MQ=255) ttGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCtt > 1:100984/1‑103 (MQ=255) ttGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCtt < 2:100984/103‑1 (MQ=255) ttGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTAccc < 2:1132911/150‑1 (MQ=255) gACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTc < 1:798313/150‑1 (MQ=255) tCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCccagc > 2:1430986/1‑150 (MQ=255) cGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCccagcca < 2:1115135/150‑1 (MQ=255) cGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCccagcca > 1:1403039/1‑150 (MQ=255) gCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCccagccag > 1:811191/1‑150 (MQ=255) gCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCccagccag > 1:1654495/1‑150 (MQ=255) agcTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCGTGAAAACCCTCGGTGCGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCCCAGCCAGGATaaaa < 1:1744985/150‑1 (MQ=255) ttCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCGCGCAGCCAGGATAAAacac > 2:1116711/1‑150 (MQ=255) ttCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTAGACAGTACCCTCCCAGCCAGGATAAAacac < 1:1162723/150‑1 (MQ=255) tCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCCCAGCCAGGATAAAACACg > 2:419691/1‑150 (MQ=255) cAT‑TGCGGGCGGTTTATTTACCAAGCGATTGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCCCAGCCAGGATAAAACACGc < 1:1928877/150‑1 (MQ=255) | TTCAATGCGCCAGACAGCTTGAGCCCGTTCGGTGATGGGGGGGCCAATGCGTATTGTTATTGCAAGGGTGATCCAGTGAACAAAGTGGATCCGAGTGGTCACGTTCCAACTGGTCACGTTGACTATCCGCCCAGCAGCTTCAT‑TGCGGGCGGTTTATTTACCAAGCGATGGGGACTCCGCTCGGCGGCATCATATCAGTGGGGTCAAAAAGCTCCGGCCTTGAAAACCCTCGGTGTGCAGAAGGCAGTGGATGAATTCGACAGTACCCTCCCAGCCAGGATAAAACACGC > NC_002947/3581305‑3581594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |