New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4043100 =	67 (0.920)	4 (0.060)	4/244	NT	5.9%	coding (688/978 nt)	PP_3564	AraC family transcriptional regulator
	?	NC_002947	4043129 =	62 (0.860)					coding (659/978 nt)	PP_3564	AraC family transcriptional regulator

TGTCACGCGCTTGCGGGCGAACCCGTGCGCTCAAAGGGCTGGCTGACATGCTGGTGGACGAGACCCGCGACAGCCGTCACGCCTTGCGCTCGCTGGAGCTGGGTGCTTGTCAGGGGCGCCAGGTGCAGCGGGCGCAAGCACTGATGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4043249‑4043100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACGGCTGTCGCGGGTCTCGTCCACCAGCATGTCAGCCAGCC  >  NC_002947/4043129‑4043213                                                                                                                                                                                                                                             TGTCACGCGCTTGCGGGCGAACCCGTGCGCTCAAAGGGCTGGCTGACATGCTGGTGGACGAGACCCGCGACAGCCGTCACGCCTTGCGCTCGCTGGAGCTGGGTGCTTGTCAGGGGCGCCAGGTGCAGCGGGCGCAAGCACTGATGCGCC                                                                                       >  1:798317/1‑150                                                                                                                      GCCAGGTGCAGCGGGCGCAAGCAATGATGCGCCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACGGCTGTCGCGGGTCTCGTCCACCAGCATGTCAGCCAGCC  <  1:512106/118‑1                                                                                                                      GCCAGGTGCAGCGGGCGCAAGCAATGATGCGCCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACGGCTGTCGCGGGTCTCGTCCACCAGCATGTCAGCCAGCC  >  2:512106/1‑118                                                                                                                       CCAGGTGCAGCGGGCGCAAGCACTGATGCGCCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACGGCTGTCGCGGGTCTCGTCCACCAGCAT             >  1:689634/1‑106                                                                                                                       CCAGGTGCAGCGGGCGCAAGCACTGATGCGCCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACGGCTGTCGCGGGTCTCGTCCACCAGCAT             <  2:689634/106‑1                                                                                                                                                                                                                                             TGTCACGCGCTTGCGGGCGAACCCGTGCGCTCAAAGGGCTGGCTGACATGCTGGTGGACGAGACCCGCGACAGCCGTCACGCCTTGCGCTCGCTGGAGCTGGGTGCTTGTCAGGGGCGCCAGGTGCAGCGGGCGCAAGCACTGATGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4043249‑4043100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACGGCTGTCGCGGGTCTCGTCCACCAGCATGTCAGCCAGCC  >  NC_002947/4043129‑4043213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.