New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4140927 =	57 (0.780)	3 (0.040)	3/234	NT	5.3%	coding (511/597 nt)	PP_5609	hypothetical protein
	?	NC_002947	4140960 =	53 (0.770)					coding (544/597 nt)	PP_5609	hypothetical protein

GGAGGGCGCTCCTTGAAGGTCGGGCGCGGCGGGTAAGCACGCCACGCCCCGGCCCGTCTTGGTTGTTGTTATTGAGCGTTGGCTTTTTCGGCAGCCAGTTCTTCCAGGTCGATGTAACGGTTGCCGATGCGCGGGTGCAGGCGGCCGC‑CATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4141081‑4140927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcggcAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACCCGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAAC  >  NC_002947/4140960‑4141103                                                                                                                                                                                                                                                                                                              GGAGGGCGCTCCTTGAAGGTCGGGCGCGGCGGGTAAGCACGCCACGCCCCGGCCCGTCTTGGTTGTTGTTATTGAGCGTTGGCTTTTTCGGCAGCCAGTTCTTCCAGGTCGATGTAACGGTTGCCGATGCGCGGGTGCAGGCGGCCGC‑CA                                                                                                                                                       >  2:1146662/1‑150                                  TAAGCACGCCACGCCCCGGCCCGTCTTGGTTGTTGTTATTGAGCGTTGGCTTTTTCGGCAGCCAGTTCTTCCAGGTCGATGTAACGGTTGCCGATG‑GCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGG                                                                                                                      <  1:110254/150‑1                                                                                                          AGGTCGATGTAACGGTTGCCGATGCGCGGGTGCAGGCGGCCGC‑CATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAA                                                                                               >  1:1936804/1‑101                                                                                                          AGGTCGATGTAACGGTTGCCGATGCGCGGGTGCAGGCGGCCGC‑CATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAA                                                                                               <  2:1936804/101‑1                                                                                                                                                  CGC‑CATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACCCGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCT      <  2:110254/150‑1                                                                                                                                                       ATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACCCGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAAC  <  2:1929871/150‑1                                                                                                                                                        TCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACCCGCCGCGC                                               <  1:1489501/104‑1                                                                                                                                                        TCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACCCGCCGCGC                                               >  2:1489501/1‑104                                                                                                                                                                                                                                                                                                              GGAGGGCGCTCCTTGAAGGTCGGGCGCGGCGGGTAAGCACGCCACGCCCCGGCCCGTCTTGGTTGTTGTTATTGAGCGTTGGCTTTTTCGGCAGCCAGTTCTTCCAGGTCGATGTAACGGTTGCCGATGCGCGGGTGCAGGCGGCCGC‑CATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4141081‑4140927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcggcAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACCCGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAAC  >  NC_002947/4140960‑4141103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.