| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4240206 | 72 (0.990) | 5 (0.080) | 4/224 | NT | 7.2% | coding (128/900 nt) | PP_3717 | LuxR family transcriptional regulator |
| ? | NC_002947 | = 4240223 | 63 (0.960) | coding (111/900 nt) | PP_3717 | LuxR family transcriptional regulator | |||||
CGATGCCGTTCGGGGATGCCTTGCTGGTACAGCAACTGCGGCGCCCGCCCCTGGCACTCAAGGCTGATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4240047‑4240206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcgctgcaGCAGTGGCACGTGGC‑‑‑GTTGCAGCGCGCCCTGGCCCATGGTGAAACCCCCGAGGCGCTGGAGTATGTGGCCGCTGCCATCGGCCAGTTGGTGCAGGTGGAGTCGATGATGATCAGCCTTGAGTGCCAGGGGCGGGCGCCGCAGTT < NC_002947/4240223‑4240080 CGATGCCGTTCGGGGATGCCTTGCTGGTCCAGCAACTGCGGCGCCCGCCCCTGGCACTCCAGGCTGATCATCATCGTCTCCACCTGCACCAACCGGACGATGGCAGCGGCCACACACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGG < 2:72708/150‑1CGATGCCGTTCGGGGATGCCTTGCTGGTACAGCAACTGCGGCGCCCGCCCCTGGCACTCAAGGCTGATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGG < 1:1834138/150‑1CGATGCCGTTCGGGGATGCCTTGCTGGTACAGCAACTGCGGCGCCCGCCCCTGGCACTCAAGGCTGATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGG < 2:1472910/150‑1 CAGCAACTGCGGCGCCCGCCCCTGGCACTCAAGGCTGATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTGCAGCAGTGGCACGTGGC‑‑‑GTTG < 2:1015842/150‑1 GCCCCTGGCACTCAAGGCTGATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTGCAGCAGTGGCACGTGGC‑‑‑GTTGCAGCGCGCCCTGGCCCA > 2:1097278/1‑150 GATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTG > 1:1633647/1‑93 GATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTG < 2:1633647/93‑1 ACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTGCAGCAGTGGCACGTGGC‑‑‑GTTG > 1:537462/1‑64 ACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTGCAGCAGTGGCACGTGGC‑‑‑GTTG < 2:537462/64‑1 GTTTCACCATGGGCCAGGGCGCGCTGCAAC‑‑‑GCCACGTGCCACTGCTGCAGCGCGCCCTGGCCCATGGTGAAACCCCCGAGGCGCTGGAGTATGTGGCCGCTGCCATCGGCCAGTTGGTGCAGGTGGAGTCGATGATGATCAGCCTTGAGT > 1:1097278/1‑150 GCTGCAGCAGTGGCACGTGGC‑‑‑GTTGCAGCGCGCCCTGGCCCATGGTGAAACCCCCGAGGCGCTGGAGTATGTGGCCGCTGCCATCGGCCAGTTGGTGCAGGTGGAGTCGATGATGATCAGCCTTGAGTGCCAGGGGCGGGCGCCGCAGTT > 2:867018/1‑150 CGATGCCGTTCGGGGATGCCTTGCTGGTACAGCAACTGCGGCGCCCGCCCCTGGCACTCAAGGCTGATCATCATCGACTCCACCTGCACCAACTGGCCGATGGCAGCGGCCACATACTCCAGCGCCTCGGGGGTTTCACCATGGGCCAGGGCGCGCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4240047‑4240206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcgctgcaGCAGTGGCACGTGGC‑‑‑GTTGCAGCGCGCCCTGGCCCATGGTGAAACCCCCGAGGCGCTGGAGTATGTGGCCGCTGCCATCGGCCAGTTGGTGCAGGTGGAGTCGATGATGATCAGCCTTGAGTGCCAGGGGCGGGCGCCGCAGTT < NC_002947/4240223‑4240080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |