| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4617159 | 61 (0.840) | 4 (0.060) | 4/238 | NT | 6.1% | coding (3484/4593 nt) | PP_4085 | rhs family protein |
| ? | NC_002947 | = 4617172 | 65 (0.930) | coding (3497/4593 nt) | PP_4085 | rhs family protein | |||||
CTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACCGCTACGGCTACGACCTCAACGAGCAACTGCAGACCGTTCACCAGTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4617018‑4617159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgTCGAACAGGTTGCCGGCCTTGTCGTACTTGAAATCCTCGACCTGCGTGGCCTGCCAGTTGGGGCGTGACTGGTGAACGGTCTGCAGTTGCTCGTTGAGGTCGTAGCCGTAGCGGTTGTGTCCCGAATAGGTCTTGCCCGTGTGGGGTAG < NC_002947/4617172‑4617024 CTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACCGCTACGGCTACGACCTCAACGAGCAACTGCAGACCGTTCACCAGTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCG < 1:1555931/142‑1CTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACCGCTACGGCTACGACCTCAACGAGCAACTGCAGACCGTTCACCAGTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCG > 2:1555931/1‑142 CAACTGCAGACCGTTCACCAGTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCGTCGAACAGGTTGCCGGCCTT < 1:1233897/96‑1 CAACTGCAGACCGTTCACCAGTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCGTCGAACAGGTTGCCGGCCTT > 2:1233897/1‑96 GTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCGTCGAACAGGTTGCCGGC < 1:427581/73‑1 GTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCGTCGAACAGGTTGCCGGC > 2:427581/1‑73 GTCGAACAGGTTGCCGGCCTTGTCGTACTTGAAATCCTCGACCTGCGTGGCCTGCCAGTTGGGGCAAGACTGATGTTCTGTCTGCAGTTGGTTGTTGAGGTCGTAGCCGTAGCGGTTGTGTCCCGAATAGGTCTTGCCCGTGTGGGGTAG < 1:1691263/150‑1 CTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACCGCTACGGCTACGACCTCAACGAGCAACTGCAGACCGTTCACCAGTCACGCCCCAACTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4617018‑4617159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgTCGAACAGGTTGCCGGCCTTGTCGTACTTGAAATCCTCGACCTGCGTGGCCTGCCAGTTGGGGCGTGACTGGTGAACGGTCTGCAGTTGCTCGTTGAGGTCGTAGCCGTAGCGGTTGTGTCCCGAATAGGTCTTGCCCGTGTGGGGTAG < NC_002947/4617172‑4617024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |