New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4675529 =	69 (0.950)	4 (0.060)	4/234	NT	5.8%	coding (483/561 nt)	chrR	chromate reductase
	?	NC_002947	4675557 =	64 (0.930)					coding (455/561 nt)	chrR	chromate reductase

CGGTGGTGAGTGTGTCGCCGGGGGCGATTGGTGGCTTTGGCGCCAACCATGCGGTGCGCCAGTCGCTGGTGTTTCTCGACATGCCCTGCATGCAGATGCCCGAGGCTTACCTTGGCGGTGCGGCGAGCTTGTTCGAGGATTCGGGCAAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4675680‑4675529 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagctcGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGCCCCCGGCGACACACTCACCACCGCCGTCGGCTTGCCGCTCCAGG  >  NC_002947/4675557‑4675701                                                                                                                                                                                                                                                                                                           CGGTGGTGAGTGTGTCGCCGGGGGCGATTGGTGGCTTTGGCGCCAACCATGCGGTGCGCCAGTCGCTGGTGTTTCTCGACATGCCCTGCATGCAGATGCCCGAGGCTTACCTTGGCGGTGCGGCGAGCTTGTTCGAGGATTCGGGCAAGC                                                                                                                                                     >  2:533540/1‑150                  CCGGGGGCGATTGGTGGCTTTGGCGCCAACCATGCGGTGCGCCAGTCGCTGGTGTTTCTCGACATGCCCTGCATGCAGATGCCCGAGGCTTACCTTGGCGGTGCGGCGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAG                                                                                                                                     >  1:469336/1‑149                  CCGGGGGCGATTGGTGGCTTTGGCGCCAACCATGCGGTGCGCCAGTCGCTGGTGTTTCTCGACATGCCCTGCATGCAGATGCCCGAGGCTTACCTTGGCGGTGCGGCGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAG                                                                                                                                     <  2:469336/149‑1                                                                                              AGATGCCCGAGGCTTACCTTGGCGGTGCGGCGAGCTTGTTCGAGGATTCGGGCAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCT                                                                                                                    >  1:1786760/1‑90                                                                                              AGATGCCCGAGGCTTACCTTGGCGGGGCGGCGAGCTTGTTCGAGGATTCGGGCAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCT                                                                                                                    <  2:1786760/90‑1                                                                                                                                                   AAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCA                                                      >  1:1883260/1‑99                                                                                                                                                   AAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCA                                                      <  2:1883260/99‑1                                                                                                                                                    AGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGCCCCCGGCGACACACTCACCACCGCCGTCGGCTTGCCGCTCCAGG  <  2:1276893/150‑1                                                                                                                                                      CTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGG                                                                                 <  1:396549/69‑1                                                                                                                                                      CTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGG                                                                                 >  2:396549/1‑69                                                                                                                                                                                                                                                                                                           CGGTGGTGAGTGTGTCGCCGGGGGCGATTGGTGGCTTTGGCGCCAACCATGCGGTGCGCCAGTCGCTGGTGTTTCTCGACATGCCCTGCATGCAGATGCCCGAGGCTTACCTTGGCGGTGCGGCGAGCTTGTTCGAGGATTCGGGCAAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4675680‑4675529 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagctcGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGCCCCCGGCGACACACTCACCACCGCCGTCGGCTTGCCGCTCCAGG  >  NC_002947/4675557‑4675701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.