New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4817645 =	71 (0.970)	4 (0.060)	4/234	NT	5.7%	coding (296/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain
	?	NC_002947	4817675 =	66 (0.960)					coding (326/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain

CCATGATATCCTGCAAATACATAATCTGGCGGAAGATTGTTTGAGGTATGTGCAGGCGCGTGGACCGGTTCTAACATTGTCATCCGCACCTCGAGACGGTGATACTTACCTTCCCCTTTTAAGAGCGCCCCATGCCAATCTGGTATGGGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4817798‑4817645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgcTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAATCTTCCGCCAGATTATGTATTTGCAGGATATCATGGTGGCATCAGGAGCTCTACGTGGT  >  NC_002947/4817675‑4817821                                                                                                                                                                                                                                                                                                               CCATGATATCCTGCAAATACATAATCTGGCGGAAGATTGTTTGAGGTATGTGCAGGCGCGTGGACCGGTTCTAACATTGTCATCCGCACCTCGAGACGGTGATACTTACCTTCCCCTTTTAAGAGCGCCCCATGCCAATCTGGTATGGGG                                                                                                                                                         >  1:347880/1‑150     GATATCCTGCAAATACATAATCTGGCGGAAGATTGTTTGAGGTATGTGCAGGCGCGTGGACCGGTTCTAACATTGTCATCCGCACCTCGAGACGGTGATACTTACCTTCCCCTTTTAAGAGCGCCCCATGCCAATCTGGTATGGGGGCGC                                                                                                                                                     <  2:1829352/150‑1                                                                                                                   CCTTTTAAGAGCGCACCATGCCAATCTGGTATGGGGGCGCTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAATCTTCCGCCCGCTCACGTATTT                                       >  2:409025/1‑150                                                                                                                         AAGAGCGCCCCATGCCAATCTGGTATGGGGGCGCTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATCCCTCAAACAATCTTCCGCCAGATTATGTATTTGCAGGA                                 <  1:409025/150‑1                                                                                                                          AGAGCGCCCCATGCCAATCTGGTATGGGGGCGCTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAATCTT                                                         <  1:1580639/125‑1                                                                                                                          AGAGCGCCCCATGCCAATCTGGTATGGGGGCGCTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAATCTT                                                         >  2:1580639/1‑125                                                                                                                                                       GCGCTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAAT                                                            <  1:355205/93‑1                                                                                                                                                       GCGCTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAAT                                                            >  2:355205/1‑93                                                                                                                                                        CGCTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAATCTTCCGCCAGATTATGTATTTGCAGGATATCATGGTGGCATCAGGAGCTCTACGTGGT  >  1:669659/1‑150                                                                                                                                                                                                                                                                                                               CCATGATATCCTGCAAATACATAATCTGGCGGAAGATTGTTTGAGGTATGTGCAGGCGCGTGGACCGGTTCTAACATTGTCATCCGCACCTCGAGACGGTGATACTTACCTTCCCCTTTTAAGAGCGCCCCATGCCAATCTGGTATGGGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4817798‑4817645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgcTCTTAAAAGGGGAAGGTAAGTATCACCGTCTCGAGGTGCGGATGACAATGTTAGAACCGGTCCACGCGCCTGCACATACCTCAAACAATCTTCCGCCAGATTATGTATTTGCAGGATATCATGGTGGCATCAGGAGCTCTACGTGGT  >  NC_002947/4817675‑4817821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.