New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 495761780 (1.100)9 (0.140) 8/218 NT 10.0% intergenic (‑55/+108) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein
?NC_002947 = 4957677 92 (1.440)intergenic (‑115/+48) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein

CGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4957455‑4957617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGAC  <  NC_002947/4957677‑4957533
                                                                                                                                                                                                                                                                                                                    
CGGTTCGGGCTCCGGCTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTCGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTT                                                                                                                                                                <  1:1378554/150‑1
  GTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGT                                                                                                                                                              <  2:1492136/150‑1
  GTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGT                                                                                                                                                              <  2:134652/150‑1
           CCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGG                                                                                                                                                     <  2:751984/150‑1
           CCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGG                                                                                                                                                     <  1:109210/150‑1
               TTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGG                                                                                                                                                      >  1:1720520/1‑145
               TTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGG                                                                                                                                                      <  2:1720520/145‑1
                                     gtaCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGG                                                                                                                           <  2:1739283/147‑1
                                                                                        TGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAA                                                                        <  1:877728/150‑1
                                                                                             TTCTTTGGTGGGCAGGCTGTCATGTTCTCCAACCATGTTCGGCCGACACGGGCCCTTGTACGAGCGTGGTTACCCGCGAAGGCGTCGTTCCTGGCAACCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGAC                                                                   <  2:801382/150‑1
                                                                                                TTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGC                                                                                            <  1:1698581/122‑1
                                                                                                TTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGC                                                                                            >  2:1698581/1‑122
                                                                                                      GGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                          >  2:1405834/1‑118
                                                                                                      GGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                          <  1:1405834/118‑1
                                                                                                                        TCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                          <  1:429646/100‑1
                                                                                                                        TCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                          >  2:429646/1‑100
                                                                                                                                                    TTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAA                                                                        >  1:631628/1‑90
                                                                                                                                                    TTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAA                                                                        <  2:631628/90‑1
                                                                                                                                                     cgatctAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCAC           <  2:1555203/144‑1
                                                                                                                                                         GGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCA       <  2:656118/150‑1
                                                                                                                                                            GCGGGTTTACCCGCGAAGGCGTCGGTCNTGGCAATCGAGGNTGTCGCNGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCAAACAAAGAACACCACCagatcg    >  1:1555203/1‑144
                                                                                                                                                            GCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCG    >  1:780492/1‑150
                                                                                                                                                            GCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAG                                                                       <  1:224753/83‑1
                                                                                                                                                            GCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAG                                                                       >  2:224753/1‑83
                                                                                                                                                               GGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGAC  <  1:816262/149‑1
                                                                                                                                                               GGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGAC  >  2:816262/1‑149
                                                                                                                                                                                                                                                                                                                    
CGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4957455‑4957617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGAC  <  NC_002947/4957677‑4957533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.