New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 495761780 (1.100)9 (0.140) 8/218 NT 10.0% intergenic (‑55/+108) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein
?NC_002947 = 4957677 92 (1.440)intergenic (‑115/+48) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein

Only 100 of 119 total aligned reads displayed.

TCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATC  >  NC_002947/4957471‑4957764
                                                                                                                                                  |                                                                                                                                                   
        gAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAAt                                                                                                                                          <  2:531941/150‑1 (MQ=255)
        gAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAAt                                                                                                                                          >  2:303666/1‑150 (MQ=255)
        gAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAAt                                                                                                                                          >  2:1909848/1‑150 (MQ=255)
          aGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGc                                                                                                                                        >  1:1873406/1‑150 (MQ=255)
             ttGGCAGCGTCCACACATCCACGCCATCGAGGTGGCTGGCACGGATCGGGTTGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGCATGCGTc                                                                                                                                     >  1:42565/1‑150 (MQ=255)
                  aGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCAc                                                                                                                                                  >  2:1130627/1‑132 (MQ=255)
                     gtacacacatccACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTtacccgcgaaggcgtcggtcctgg                                                                                                                             <  2:1739283‑M1/147‑25 (MQ=255)
                         acacaTCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAAc                                                                                                                         >  2:1315814/1‑150 (MQ=255)
                         acacaTCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAAc                                                                                                                         >  1:213186/1‑150 (MQ=255)
                             aTCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCg                                                                                                                     <  1:1315814/150‑1 (MQ=255)
                                 aCGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTg                                                                                                                 >  1:637659/1‑150 (MQ=255)
                                 aCGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCCCAGAGCATGTTCGGCCGACACCATCACCCGAGAGCGCAAGCGCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTg                                                                                                                 >  1:1399540/1‑150 (MQ=255)
                                      cTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAgg                                                                                                            >  1:1112392/1‑150 (MQ=255)
                                      cTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAgg                                                                                                            >  1:507436/1‑150 (MQ=255)
                                       tCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGa                                                                                                           >  1:1176944/1‑150 (MQ=255)
                                          aGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCg                                                                                                        >  2:473146/1‑150 (MQ=255)
                                            gTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGAc                                                                                                      <  1:303666/150‑1 (MQ=255)
                                             tCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACg                                                                                                     >  2:1254122/1‑150 (MQ=255)
                                                cgGGCACGGAGCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTGAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCTATTGCGAGGACCGGCGCCt                                                                                                  <  2:169434/150‑1 (MQ=255)
                                                    cACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTcgc                                                                                              >  2:1816985/1‑150 (MQ=255)
                                                    cACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTcgc                                                                                              <  2:333179/150‑1 (MQ=255)
                                                      cGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCgg                                                                                            <  2:1103150/150‑1 (MQ=255)
                                                       ggATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCggg                                                                                           >  2:770374/1‑150 (MQ=255)
                                                         aTCAGGTCGCTGGAGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCAc                                                                                                                                                  >  2:792261/1‑93 (MQ=255)
                                                         aTCAGGTCGCTGGAGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCAc                                                                                                                                                  <  1:792261/93‑1 (MQ=255)
                                                              gTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacc                                                                                     <  1:816262‑M2/149‑5 (MQ=255)
                                                              gTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacc                                                                                     >  2:816262‑M2/1‑145 (MQ=255)
                                                                cgatctggtggtgttcttTGTTTGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCNGCGACANCCTCGATTGCCANGACCGACGCCTTCGCGGGTAaacccgc                                                                                  >  1:1555203‑M2/7‑143 (MQ=255)
                                                                cGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgc                                                                                  >  1:780492‑M2/1‑143 (MQ=255)
                                                                   tGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgctcc                                                                               <  2:656118‑M2/150‑11 (MQ=255)
                                                                       gtggtgTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgctagatcg                                                                           <  2:1555203‑M2/150‑15 (MQ=255)
                                                                        tggtgTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGt                                                                                                                                      <  2:110192/90‑1 (MQ=255)
                                                                        tggtgTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGt                                                                                                                                      >  1:110192/1‑90 (MQ=255)
                                                                          gtgtTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACaaaa                                                                        >  1:885789/1‑150 (MQ=255)
                                                                             ttCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggc                                                                     <  1:1116914/150‑1 (MQ=255)
                                                                             ttCTTTGGTGGGCAGGCTGTCATGTTCTCCAACCATGTTCGGCCGACACGGGCCCTTGTACGAGCGTGGTtacccgcgaaggcgtcgttcctggcaaccgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggac                                                                     <  2:801382‑M1/150‑81 (MQ=255)
                                                                              tCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCTCCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggcg                                                                    <  1:525842/150‑1 (MQ=255)
                                                                                tttGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTcacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgc                                                                                              <  1:1698581‑M1/122‑56 (MQ=255)
                                                                                tttGGTGGGCATGCTGTCATGTTCTCAAACCAGGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                                  <  2:168349/102‑1 (MQ=255)
                                                                                tttGGTGGGCATGCTGTCATGTTCTCAAACCAGGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                                  >  1:168349/1‑102 (MQ=255)
                                                                                      gggCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgg                                                                                            >  2:1405834‑M1/1‑61 (MQ=255)
                                                                                      gggCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgg                                                                                            <  1:1405834‑M1/118‑58 (MQ=255)
                                                                                         cATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTAt                                                         <  2:1177093/150‑1 (MQ=255)
                                                                                         cATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTAt                                                         >  2:1544219/1‑150 (MQ=255)
                                                                                         cATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTAt                                                         <  2:1176944/150‑1 (MQ=255)
                                                                                         cATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTAt                                                         <  2:1782470/150‑1 (MQ=255)
                                                                                          aTGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATg                                                        <  1:1171026/150‑1 (MQ=255)
                                                                                           tGCTTTCATGTTCTCAACCCATGTTCGGCCGGCACGGTCCCTTGTAGGCGCGGGTTCTCCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATgg                                                       <  1:1629580/150‑1 (MQ=255)
                                                                                            gCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATggg                                                      <  1:1713896/150‑1 (MQ=255)
                                                                                              tGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGAt                                                    >  1:660775/1‑150 (MQ=255)
                                                                                                 cATGTTCTCAAACTATGTTCGGCCGACACGGTCACTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCACCGACTACCTCTATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGTCGGCGTCGGCTATGGGATcgc                                                 <  2:238818/150‑1 (MQ=38)
                                                                                                 cATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATcgc                                                 <  2:507436/150‑1 (MQ=255)
                                                                                                  aTGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATcgcg                                                >  2:1811084/1‑150 (MQ=255)
                                                                                                   tGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGa                                               >  1:356010/1‑150 (MQ=255)
                                                                                                    gTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGaa                                              <  2:1350519/150‑1 (MQ=255)
                                                                                                        tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTcacccgcgaatgcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgg                                                                                            >  2:429646‑M1/1‑43 (MQ=255)
                                                                                                        tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTcacccgcgaatgcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgg                                                                                            <  1:429646‑M1/100‑58 (MQ=255)
                                                                                                        tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATAcc                                          >  1:756472/1‑150 (MQ=255)
                                                                                                         cAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTCCAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCt                                         <  1:1909848/150‑1 (MQ=255)
                                                                                                          aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGGATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCtt                                        >  1:277325/1‑150 (MQ=255)
                                                                                                               aTGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATc                                   <  1:1544219/150‑1 (MQ=255)
                                                                                                                 gTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCAt                                 <  2:1112392/150‑1 (MQ=255)
                                                                                                                  ttCGGCCGACGCGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCAtt                                >  1:1664589/1‑150 (MQ=255)
                                                                                                                     ggCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTcc                             <  2:1251128/150‑1 (MQ=255)
                                                                                                                      gCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCt                            <  1:656118/150‑1 (MQ=255)
                                                                                                                       ccGACACGGTCCCTTGTAGGAGCGGGGTCACCCGCGAATGCGGCGGCAGCGACAACCTCGGTTGCCAGGACCGACGCCTTCGCGGGTAAAACCGCTCCTACAAAAGACGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTc                           >  2:235106/1‑150 (MQ=255)
                                                                                                                        cGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTTCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTcc                          >  2:662783/1‑149 (MQ=255)
                                                                                                                        cGACACGGCCCCGTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCg                          <  2:463153/150‑1 (MQ=255)
                                                                                                                         gACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCCACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCgg                         >  2:271126/1‑150 (MQ=255)
                                                                                                                              ggTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggcggc                                                                  >  1:1116095/1‑104 (MQ=255)
                                                                                                                              ggTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATg                                                        >  1:472896/1‑114 (MQ=255)
                                                                                                                              ggTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCCCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggcggc                                                                  <  2:1116095/104‑1 (MQ=255)
                                                                                                                               gTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGGTTGCCAGGAACGACGCCTTCGCGGGTAaccacgctcgtacaagggcccgtgtcggccgaacatggttggagaacatgacagcctgcccaccaaagaa                   <  2:801382‑M2/150‑71 (MQ=255)
                                                                                                                               gTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCtt                                        >  1:1233091/1‑129 (MQ=255)
                                                                                                                                  ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGgc                        >  2:1062654/1‑142 (MQ=255)
                                                                                                                                  ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGgc                        <  1:1062654/142‑1 (MQ=255)
                                                                                                                                  ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTgc                <  1:300029/150‑1 (MQ=255)
                                                                                                                                   cTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgc                                                                                  >  2:224753‑M2/1‑76 (MQ=255)
                                                                                                                                   cTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgc                                                                                  <  1:224753‑M2/83‑8 (MQ=255)
                                                                                                                                    ttGTAGGAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaa                                                                          <  2:631628‑M1/90‑76 (MQ=255)
                                                                                                                                    ttGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacacca              <  1:877728‑M2/150‑76 (MQ=255)
                                                                                                                                    ttGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgctcctacaa                                                                          >  1:631628‑M2/1‑75 (MQ=255)
                                                                                                                                    ttGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgctcctacaa                                                                          <  2:631628‑M2/90‑16 (MQ=255)
                                                                                                                                    ttGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTgctg              >  2:367195/1‑148 (MQ=255)
                                                                                                                                     cgatctagcgggtTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccac             <  2:1555203‑M1/144‑137 (MQ=255)
                                                                                                                                       tAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGccgccg           >  1:644860/1‑150 (MQ=255)
                                                                                                                                        aGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGa          <  1:1200669/150‑1 (MQ=255)
                                                                                                                                        aGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAGTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGa          <  1:1254122/150‑1 (MQ=255)
                                                                                                                                         ggAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccacccca         <  2:656118‑M1/150‑141 (MQ=255)
                                                                                                                                          gAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGc        >  2:1294826/1‑150 (MQ=255)
                                                                                                                                          gAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGc        >  1:1069303/1‑150 (MQ=255)
                                                                                                                                            gCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcg      >  1:780492‑M1/1‑7 (MQ=255)
                                                                                                                                            gCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaag                                                                         >  2:224753‑M1/1‑7 (MQ=255)
                                                                                                                                            gCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaag                                                                         <  1:224753‑M1/83‑77 (MQ=255)
                                                                                                                                            gCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCAc      <  2:756472/150‑1 (MQ=255)
                                                                                                                                              gggTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCAc      >  1:328205/1‑148 (MQ=255)
                                                                                                                                              gggTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCAc      <  2:328205/148‑1 (MQ=255)
                                                                                                                                               ggTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcgac    <  1:816262‑M1/149‑146 (MQ=255)
                                                                                                                                               ggTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcgac    >  2:816262‑M1/1‑4 (MQ=255)
                                                                                                                                                gTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGAtc  >  1:1168040/1‑150 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
TCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATC  >  NC_002947/4957471‑4957764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.