New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5012291 =	72 (0.990)	4 (0.060)	3/230	NT	5.9%	coding (166/402 nt)	PP_5676	hypothetical protein
	?	NC_002947	5012380 =	61 (0.900)					coding (77/402 nt)	PP_5676	hypothetical protein

TGATTCGCTTCATCTCCGTGAAGTCCGCCGGCGGAGGACATTATGGACGCTCGCCCACCTTGACGCTGGTGATCCAAGAGCACTATGTGTTTTAAGGGTGCTGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5012445‑5012291 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatcaccaGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTCGACGAACTCGATG  >  NC_002947/5012380‑5012528                                                                                                                                                                                                                                                                                                                  TGATTCGCTTCATCTCCGTGAAGTCCGCCGGCGGAGGACATTATGGACGCTCGCCCACCTTGACGCTGGTGATCCAAGAGCACTATGTGTTTTAAGGGTGCTGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGAT                                                                                                                                                            <  2:1604604/150‑1    TTCGCTTCATCTCCGTGAAGTCCGCCGGCGGAGGACATTATGGACGCTCGCCCACCTTGACGCTGGTGATCCAAGAGCACTATGTGTTTTAAGGGTGCTGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATCAC                                                                                                                                                         >  1:109664/1‑150                                                  CTCGCCCACCTTGACGCTGGTGATCCAAGAGCACTATGTGTTTTAAGGGTGCTGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATCACCAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGAC                                                                                                           >  2:1641876/1‑150                                                                 gcgGGTGATCCAAGAGCACTATGTGTTTTAAGGGTGCTGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATCACCAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAG                                                                                            >  1:1934363/4‑150                                                                                             TAAGGGTGCTGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATCACCAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATT                                                                <  1:1641876/150‑1                                                                                                      TGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATCACCAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAG                                                       <  2:1934363/150‑1                                                                                                        GATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATC                                                                                                                                                           >  1:1905856/1‑48                                                                                                        GATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATC                                                                                                                                                           <  2:1905856/48‑1                                                                                                                                                    GATCACCAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAAT                                                                 >  1:677587/1‑94                                                                                                                                                    GATCACCAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAAT                                                                 <  2:677587/94‑1                                                                                                                                                      TCACCAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTCGACGAACT       >  1:438504/1‑150                                                                                                                                                          CAGCGTCAAGGTGGGCGCGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTCGACGAACTCGAT   <  1:592276/150‑1                                                                                                                                                          CAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTGGACGAACTCGAT   >  1:866389/1‑150                                                                                                                                                          CAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTCGACGAACTCGAT   >  2:201617/1‑150                                                                                                                                                          CAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGA                                           >  2:1806184/1‑110                                                                                                                                                          CAGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGA                                           <  1:1806184/110‑1                                                                                                                                                          CAGCGGCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTAACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCCAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTCGACGAACTCGAc   <  2:182094/150‑2                                                                                                                                                           AGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCGTTCGCCAGCAAGCATCTGTTCGACGAACTCGATG  <  1:1125439/150‑1                                                                                                                                                           AGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTCGACGAACTCGATG  <  1:368956/150‑1                                                                                                                                                                                                                                                                                                                  TGATTCGCTTCATCTCCGTGAAGTCCGCCGGCGGAGGACATTATGGACGCTCGCCCACCTTGACGCTGGTGATCCAAGAGCACTATGTGTTTTAAGGGTGCTGGATGAGATTGACCAGCAGGAACAAGCTTGGCTTGGGTCAGGTCGGATCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5012445‑5012291 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatcaccaGCGTCAAGGTGGGCGAGCGTCCATAATGTCCTCCGCCGGCGGACTTCACGGAGATGAAGCGAATCATCACTGGCCATGGCGTCAATTCCTAGTGAGGCTTGCGACCGAGCCCGCCCTCGCCAGCAAGCATCTGTTCGACGAACTCGATG  >  NC_002947/5012380‑5012528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.