New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5295539 =	71 (0.970)	4 (0.060)	4/228	NT	6.1%	intergenic (+22/+104)	PP_4668/PP_4669	LysR family transcriptional regulator/OmpA family protein
	?	NC_002947	5295617 =	57 (0.850)					intergenic (+100/+26)	PP_4668/PP_4669	LysR family transcriptional regulator/OmpA family protein

GCGCCGGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5295695‑5295539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctacagggggCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCATGC  >  NC_002947/5295617‑5295764                                                                                                                                                                                                                                                                                                                   GCGCCGGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTA                                                                                                                                                             <  1:571616/150‑1   GCCGGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACA                                                                                                                                                           <  2:1085990/150‑1     CGGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGG                                                                                                                                                         <  2:352274/150‑1      GGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGG                                                                                                                                                        <  1:1454830/150‑1                                                                                  CCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGG                                                                                          >  2:103080/1‑136                                                                                  CCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGG                                                                                          <  1:103080/136‑1                                                                                   CCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGAC                                                                                                                  >  1:983930/1‑111                                                                                   CCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGAC                                                                                                                  <  2:983930/111‑1                                                                                                                                                    CTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGC          <  1:814267/150‑1                                                                                                                                                    CTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGC          >  1:703974/1‑150                                                                                                                                                    CTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGC                                         <  2:1648580/119‑1                                                                                                                                                    CTACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGC                                         >  1:1648580/1‑119                                                                                                                                                    CTACAGGGGGCTAGGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGg          >  2:1931019/1‑149                                                                                                                                                      ACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAG                                  <  1:196786/124‑1                                                                                                                                                      ACAGGGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAG                                  >  2:196786/1‑124                                                                                                                                                          GGGGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCAT    >  2:921240/1‑150                                                                                                                                                            GGCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCATGC  <  2:626381/150‑1                                                                                                                                                                                                                                                                                                                   GCGCCGGGCGTACCGAGAACCGTCGGGTGTCCATCGTGGTAGCGTCCTACTGATCGTCGCCGCTCGGGCTGTCACATAGCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5295695‑5295539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctacagggggCTATGTGACAGCCCGAGCGGCGACGATCAGTAGGACGCTACCACGATGGACACCCGACGGTTCTCGGTACGCCCGGCGCTGGTGCGGTTGTCCGCCACCGGCTGGCTGCTGCCCAGGCCACGGCTCTGAATGTTCTGTGCCTGCATGC  >  NC_002947/5295617‑5295764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.