New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5336775	71 (0.970)	4 (0.060)	4/240	NT	5.4%	coding (177/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
	?	NC_002947	= 5336801	72 (1.020)					coding (203/1443 nt)	PP_4696	nitrogen regulation protein NR(I)

CCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5336645‑5336775 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGG  <  NC_002947/5336801‑5336655                                                                                                                                                                                                                                                                                        CCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTGGCCGAGCTTGATCAGCT                                                                                                                                  >  2:1438944/1‑150                TTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGC                                                                                                                   <  1:1438944/150‑1                                                                           TTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGG                                                                                                                         <  1:1121946/85‑1                                                                           TTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTGGCCGAGCTTGATCAGCTCGGTGCCGG                                                                                                                         >  2:1121946/1‑85                                                                                                                                GCCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAG   <  1:1315103/150‑1                                                                                                                                 CCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGG  >  1:1172969/1‑150                                                                                                                                 CCCTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGG  >  1:1256833/1‑150                                                                                                                                                                                                                                                                                        CCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5336645‑5336775 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccTGGCCGAGCTTGATCAGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGG  <  NC_002947/5336801‑5336655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.