| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5426045 = | 60 (0.820) | 4 (0.060) | 4/236 | NT | 6.4% | coding (533/1239 nt) | PP_4765 | hypothetical protein |
| ? | NC_002947 | 5426081 = | 59 (0.850) | coding (569/1239 nt) | PP_4765 | hypothetical protein | |||||
CTGAGGGCGATGTTCTTCAGCGGTGCGCCCGCGAACTTGTCCTTGAGTAGCGCGCTCCAGCCCGCTACTTCAAAACCGCAGTTGCTCGGCTGCAAAGGCGAGATATCCACAGCCCGTTCTGCCAGCAGCGGTTGCCAGCTGCCGTCAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5426195‑5426045‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaacGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAG > NC_002947/5426081‑5426226 CTGAGGGCGATGTTCTTCAGCGGTGCGCCCGCGAACTTGTCCTTGAGTAGCGCGCTCCAGCCCGCTACTTCAAAACCGCAGTTGCTCGGCTGCAAAGGCGAGATATCCACAGCCCGTTCTGCCAGCAGCGGTTGCCAGCTGCCGTCAGAA < 2:893414/150‑1 TGAGGGCGATGTTCTTCAGCGGTGCGCCCGCGAACTTGTCCTTGAGTAGCGCGCTCCAGCCCGCTACTTCAAAACCGCAGTTGCTCGGCTGCAAAGGCGAGATATCCACAGCCCGTTCTGCCAGCAGCGGTTGCCAGCTGCCGTCAGAAC > 2:1805579/1‑150 GTTCTGCCAGCAGCGGTTGCCAGCTGCCGTCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAG < 1:34159/110‑1 GTTCTGCCAGCAGCGGTTGCCAGCTGCCGTCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAG > 2:34159/1‑110 TGCCAGCAGCGGTTGCCAGCTGCCGTCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGA < 1:1706036/62‑1 TGCCAGCAGCGGTTGCCAGCTGCCGTCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGA > 2:1706036/1‑62 CAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTC < 1:1037634/125‑1 CAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTC > 2:1037634/1‑125 GAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAG < 2:1841136/150‑1 GAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCG > 1:303869/1‑90 GAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCG < 2:303869/90‑1 AACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCG < 1:835206/89‑1 AACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCG > 2:835206/1‑89 CTGAGGGCGATGTTCTTCAGCGGTGCGCCCGCGAACTTGTCCTTGAGTAGCGCGCTCCAGCCCGCTACTTCAAAACCGCAGTTGCTCGGCTGCAAAGGCGAGATATCCACAGCCCGTTCTGCCAGCAGCGGTTGCCAGCTGCCGTCAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5426195‑5426045‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaacGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAG > NC_002947/5426081‑5426226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |