New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5441549	79 (1.080)	8 (0.110)	6/238	NT	9.6%	coding (1083/1653 nt)	PP_4780	acyl‑CoA dehydrogenase
	?	NC_002947	= 5441562	75 (1.070)					coding (1070/1653 nt)	PP_4780	acyl‑CoA dehydrogenase

TTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5441396‑5441549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGAGGCCGCCGAATGCCTGGGT  <  NC_002947/5441562‑5441414                                                                                                                                                                                                                                                                                                                 TTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCAT                                                                                                                                                           >  2:1716687/1‑150  TCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATG                                                                                                                                                          <  1:1716687/150‑1  TCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATG                                                                                                                                                          >  1:305505/1‑150   CCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGC                                                                                                                                                         >  2:480911/1‑150    CACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCG                                                                                                                                                        >  1:1827763/1‑150     ACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGC                                                                                                                                                       >  1:1325776/1‑150     ACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGC                                                                                                                                                       >  2:1767700/1‑150                         GCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTACAGCGCACGGACCATGCGCGCGCGCGGAGCTGGCCCATG                                                                                                                                   <  2:1574151/150‑1                           ATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCTCGCCCTGAGCTTGCGCATGGG                                                                                                                                 <  2:305505/150‑1                            TTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCTCGCCCTGAGCTTGCGCATGGG                                                                                                                                 >  2:344751/1‑149                            TTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCTCGCCCTGAGCTTGCGCATGGG                                                                                                                                 <  1:344751/149‑1                                                                                  CACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCTCGCCCTGAGCTTGCGCATGGGC                                                                                                                                <  1:522178/96‑1                                                                                  CACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCTCGCCCTGAGCTTGCGCATGGGC                                                                                                                                >  2:522178/1‑96                                                                                   ACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCTCGCCCTGAGCTTGCGCATG                                                                                                                                   <  2:1710282/92‑1                                                                                   ACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGCTCGCCCTGAGCTTGCGCATG                                                                                                                                   >  1:1710282/1‑92                                                                                                                                                   CCATGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGAGGCCGCCGAATG         >  2:1530169/1‑150                                                                                                                                                   CCATGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAAC                       >  2:779414/1‑136                                                                                                                                                   CCATGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAAC                       <  1:779414/136‑1                                                                                                                                                     ATGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGAGGCCGCCGAATGCC       <  1:1530169/150‑1                                                                                                                                                       GCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGAGGCCGCCGAATGCCTG     <  1:1838993/150‑1                                                                                                                                                          CTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGAGGCCGCCGAATGCCTGGGT  <  1:1219815/150‑1                                                                                                                                                                                                                                                                                                                 TTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5441396‑5441549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGAGGCCGCCGAATGCCTGGGT  <  NC_002947/5441562‑5441414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.