New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5489667	68 (0.930)	6 (0.090)	6/238	NT	8.4%	coding (101/597 nt)	PP_4825	MarC family membrane protein
	?	NC_002947	= 5489688	66 (0.940)					coding (122/597 nt)	PP_4825	MarC family membrane protein

CCCAAGGAACACTGCTCATGCTCCATGAGTTGTTCAGCGTCTACCTGAAAATGCTCGTGCTCTACAGCCCGTTCTTCGTGCTGTCGTGTTTCATCAGCCTGACCCGTGGCCACTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5489550‑5489667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagGCCAGTTGCTTGCGCTCCTTGCTGGAGTGGCCACGGGTCAGGCTGATGAAACACGACAGCACGAAGAACGGGCTGTAGAGCACGAGCATTTTCAGGTAGACGCTGAACAACTCATGGAGCATGAGCAGTGTTCCTTGGGTTTATGCCG  <  NC_002947/5489688‑5489541                                                                                                                                                                                                                                                                            CCCAAGGAACACTGCTCATGCTCCATGAGTTGTTCAGCGTCTACCTGAAAATGCTCGTGCTCTACAGCCCGTTCTTCGTGCTGTCGTGTTTCATCAGCCTGACCCGTGGCCACTCCAGGCCAGTTGCTTGCGCTCCTTGCTGGAGTGGCC                                                                                                                      >  2:1394128/1‑150    AAGGAACACTGCTCATGCTCCATGAGTTGTTCAGCGTCTACCTGAAAATGCTCGTGCTCTACAGCCCGTTCTTCGTGCTGTCGTGTTTCATCAGCCTGACCCGTGGCCACTCCAGGCCAGTTGCTTGCGCTCCTTGCTGGAGTGGCCACG                                                                                                                   <  1:1394128/150‑1                                                                    CCCGTTCTTCGTGCTGTCGTGTTTCATCAGCCTGACCCGTGGCCACTCCAGGCCAGTTGCTTGCGCTCCTTGCTGGAGTGG                                                                                                                        <  1:1890374/81‑1                                                                    CCCGTTCTTCGTGCTGTCGTGTTTCATCAGCCTGACCCGTGGCCACTCCAGGCCAGTTGCTTGCGCTCCTTGCTGGAGTGG                                                                                                                        >  2:1890374/1‑81                                                                                                        CCGTTGCCACTCCAGGCCAGTTGCTTGCGCTCCTTGCTGGAGTGGC                                                                                                                       <  1:243375/46‑1                                                                                                        CCGTGGCCACTCCAGGCCAGTTGCTTGCGCTCCTTGCTGGAGTGGC                                                                                                                       >  2:243375/1‑46                                                                                                                     AGGCCAGTTGCTTGCGCTCCTTGCTGGAGTGGCCACGGGTCAGGCTGATGAAACACGACAGCACGAAGAACGGGCTGTAGAGCACGAGCATTTTCAGGTAGACGCTGAACAACTCATGGAGCATGAGCAGTGTTCCTTGGGTTTATGCCG  >  2:868168/1‑150                                                                                                                                                                                                                                                                            CCCAAGGAACACTGCTCATGCTCCATGAGTTGTTCAGCGTCTACCTGAAAATGCTCGTGCTCTACAGCCCGTTCTTCGTGCTGTCGTGTTTCATCAGCCTGACCCGTGGCCACTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5489550‑5489667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagGCCAGTTGCTTGCGCTCCTTGCTGGAGTGGCCACGGGTCAGGCTGATGAAACACGACAGCACGAAGAACGGGCTGTAGAGCACGAGCATTTTCAGGTAGACGCTGAACAACTCATGGAGCATGAGCAGTGTTCCTTGGGTTTATGCCG  <  NC_002947/5489688‑5489541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.