New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5518985 =	88 (1.210)	6 (0.090)	5/236	NT	7.2%	intergenic (‑27/+4)	PP_4851/PP_4852	phosphate starvation‑inducible protein PsiF/AraC family transcriptional regulator
	?	NC_002947	5519055 =	72 (1.040)					coding (723/789 nt)	PP_4852	AraC family transcriptional regulator

TGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5519139‑5518985 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacatGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGG  >  NC_002947/5519055‑5519202                                                                                                                                                                                                                                                                                                                  TGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑G                                                                                                                                                           >  2:1906310/1‑150   CCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAA                                                                                                                                                         >  1:1296669/1‑150   CCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAA                                                                                                                                                         <  1:1853903/150‑1   CCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAA                                                                                                                                                         <  2:324110/150‑1    CATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAAC                                                                                                                                                        >  1:627146/1‑150     ATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGTTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAACA                                                                                                                                                       >  1:909172/1‑150                                                                                    CCATGTTCCAGCGCCAGGCCCGGTGTCCGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTT                                                                         >  1:1442720/1‑150                                                                                    CCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTC                                                                                 >  1:350184/1‑141                                                                                    CCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTC                                                                                 <  2:350184/141‑1                                                                                      ATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGA                                                                      >  2:1150472/1‑150                                                                                               CGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCA                                                             <  1:1150472/150‑1                                                                                                                               CCGGCAGGCGCGGACGGGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGGGCATGCGTCATTCGCCAAA                              <  2:1442720/150‑1                                                                                                                                                         ACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAGTCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACG                                                      <  1:854121/100‑1                                                                                                                                                         ACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACT    <  2:133678/150‑1                                                                                                                                                         ACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACG                                                      >  2:854121/1‑100                                                                                                                                                           ATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGG  >  1:742165/1‑150                                                                                                                                                                                                                                                                                                                  TGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCT‑GAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5519139‑5518985 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacatGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGG  >  NC_002947/5519055‑5519202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.