New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5611672	73 (1.000)	4 (0.060)	4/236	NT	5.5%	coding (615/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	= 5611698	69 (0.990)					coding (641/1176 nt)	PP_4931	hypothetical protein

TGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGCTGGCAGGTGAACGCATCGAACCCTTGCGTGAAGGTAATGCGTTGGTCGGCCTGCGCGTGGACGACCGGGAAATCCGTGCCCAACGCATCGTATTGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5611522‑5611672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATA  <  NC_002947/5611698‑5611662                                                                                                                                                                                              TGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGCTGGCAGGTGAACGCATCGAACCCTTGCGTGAAGGTAATGCGTTGGTCGGCCTGCGCGTGGACGACCGGGAAATCCGTGCCCAACGCATCGTATTGAGCGC                                        >  2:1215451/1‑150                                                                          TTGCGTGAAGGTAATGCGTTGGTCGGCCTGCGCGTGGACGACCGGGAAATCCGTGCCCAACGCATCGTATTGAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCT       <  1:345815/110‑1                                                                          TTGCGTGAAGGTAATGCGTTGGTCGGCCTGCGCGTGGACGACCGGGAAATCCGTGCCCAACGCATCGTATTGAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCT       >  2:345815/1‑110                                                                              GTGAAGGTAATGCGTTGGTCGGCCTGCGCGTGGACGACCGGGAAATCCGTGCCCAACGCATCGTATTGAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATA  <  1:1330763/111‑1                                                                              GTGAAGGTAATGCGTTGGTCGGCCTGCGCGTGGACGACCGGGAAATCCGTGCCCAACGCATCGTATTGAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATA  >  2:1330763/1‑111                                                                                                                                                                                              TGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGCTGGCAGGTGAACGCATCGAACCCTTGCGTGAAGGTAATGCGTTGGTCGGCCTGCGCGTGGACGACCGGGAAATCCGTGCCCAACGCATCGTATTGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5611522‑5611672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATA  <  NC_002947/5611698‑5611662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.