New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5681397 =	63 (0.860)	3 (0.050)	3/202	NT	5.6%	intergenic (‑63/+145)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
	?	NC_002947	5681512 =	50 (0.840)					intergenic (‑178/+30)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein

GCGGATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5681568‑5681397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccacTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGCCCA  >  NC_002947/5681512‑5681657                                                                                                                                                                                                                                                                                                                                GCGGATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTT                                                                                                                                                                          >  1:1187497/1‑150  CGGATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTC                                                                                                                                                                         <  1:1742608/150‑1   GGATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCG                                                                                                                                                                        >  2:1336632/1‑150    GATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGC                                                                                                                                                                       <  2:549499/150‑1    GATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGGGGGAGCGGCCTTGTGTCGCGATAGGGCTCCGCAGCAGCCCCGGCGGGTCATGCAGTGGCAATGAAAACCTGGGGCCGCTTCGCGCCCCTTTCac                                                                                                                                                                       >  1:680888/1‑148    GATCTGCAACCTGACATTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGC                                                                                                                                                                       >  2:512345/1‑150      TCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGA                                                                                                                                                                     <  2:1187497/150‑1        TGCAACCTGACCTTGGTAAGGCTGTGAGGCGCAGGGCCTGGTGGTCGGGGGTGGGAGCGGCCTTGTGGCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCAGGCCGTGGCAATGAAAGCCTGTGGCCGCTTCGCGCCCCTTTCGCGACA                                                                                                                                                                   >  2:908771/1‑150           AACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAA                                                                                                                                                                <  2:1743059/150‑1            ACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAG                                                                                                                                                               >  1:1568213/1‑150              CTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGC                                                                                                                                                             <  1:908771/150‑1                 ACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGC                                                                                                                                                          <  1:653710/150‑1                  CCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT                                                                                                                                                         >  2:361918/1‑150                   gggGGTGAGGAGGTGGGGCGCAGGGCCTGGGGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTC                                                                                                                                                        <  2:10177/147‑1                   CTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTTTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATAAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTC                                                                                                                                                        >  2:638513/1‑150                   CTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTC                                                                                                                                                        >  2:227890/1‑150                    TTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTTGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCC                                                                                                                                                       >  1:666315/1‑150                    TTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCC                                                                                                                                                       <  1:987689/150‑1                      GGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCA                                                                                                                                                     <  1:1620884/150‑1                       GTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC                                                                                                                                                    >  2:260246/1‑150                        TTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCC                                                                                                                                                      <  1:1743848/147‑1                        TTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCC                                                                                                                                                      >  2:1743848/1‑147                                                  GGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGC                                                                                                                                                          >  2:1301997/1‑117                                                  GGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGC                                                                                                                                                          <  1:1301997/117‑1                                                            GGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGC                                                                                                                                                                       >  1:230739/1‑94                                                            GGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGC                                                                                                                                                                       <  2:230739/94‑1                                                                             GCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATC                                                                                              >  1:1563353/1‑150                                                                              CGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCC                                                                                             >  1:1024809/1‑150                                                                                             GCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGC                                                                              <  2:1563353/150‑1                                                                                                                                                        GCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGC                   >  2:995442/1‑150                                                                                                                                                        GCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTAC                                                    <  1:96752/117‑1                                                                                                                                                        GCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTAC                                                    >  2:96752/1‑117                                                                                                                                                               AAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCC            >  1:1074910/1‑150                                                                                                                                                                AGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCA           >  1:1836355/1‑150                                                                                                                                                                AGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCC                                                         <  1:592809/104‑1                                                                                                                                                                AGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCC                                                         >  2:592809/1‑104                                                                                                                                                                 GGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCGCATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAA          >  1:1572182/1‑150                                                                                                                                                                 GGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAA          >  2:1735605/1‑150                                                                                                                                                                   CCGCTACCACTCCCGACCACCAGGCCCTGCGCCGCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGGCCGGGACCCGCGCCACCTGCTCACCCACCTGCACCGCTCCCAGCTCCACCC        >  2:384057/1‑150                                                                                                                                                                      CTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGC     <  2:1024809/150‑1                                                                                                                                                                       TCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGCC    <  1:666094/150‑1                                                                                                                                                                        CCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGCCC   >  2:1094716/1‑150                                                                                                                                                                        CCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGCCC   <  1:405910/150‑1                                                                                                                                                                         CCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGCCCA  <  2:653710/150‑1                                                                                                                                                                         CCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGC     <  2:1134006/147‑1                                                                                                                                                                         CCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGC     >  1:1134006/1‑147                                                                                                                                                                         CCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCAC                                           <  2:1534635/109‑1                                                                                                                                                                         CCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCAC                                           >  1:1534635/1‑109                                                                                                                                                                                                                                                                                                                                GCGGATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5681568‑5681397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccacTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCACCTGCTCACCCACCTGCACCGCTGCCAGCTCCAACCTGCCCA  >  NC_002947/5681512‑5681657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.