New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 571825290 (1.230)7 (0.100) 6/236 NT 7.4% coding (895/1917 nt) PP_5020 methyl‑accepting chemotaxis protein
?NC_002947 = 5718270 89 (1.280)coding (913/1917 nt) PP_5020 methyl‑accepting chemotaxis protein

GCCAGCGAGCAAGCGCTGCAACGCATGGTTGAACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5718099‑5718252
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCGCGGCAGCGGCATCGCGCACCTCGGTTTGCGAAGCGGTCATCATCTGGCTGGCCTGCAGCAGTACCGTGCCTTGTTCAACCAT  <  NC_002947/5718270‑5718123
                                                                                                                                                                                                                                                                                                              
GCCAGCGAGCAAGCGCTGCAACGCATGGTTGAACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTG                                                                                                                                                          <  1:779845/150‑1
                TGCAACGCATGGTTGAACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGG                                                                                                                                                         <  1:1320050/135‑1
                TGCAACGCATGGTTGAACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGG                                                                                                                                                         >  2:1320050/1‑135
                          GGTTGAACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCCAGGCGGCCAGCAGGCCAAGGGC                                                                                                                                >  1:1873980/1‑150
                             TGAACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCCAGGCGGCCAGCAGGCCAAGGGCCAG                                                                                                                             <  1:123987/150‑1
                                ACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGC                                                                                                                          <  2:1873980/150‑1
                                     GCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGG                                                                                                                                                         <  1:95746/114‑1
                                     GCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGG                                                                                                                                                         >  2:95746/1‑114
                                                                   TGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAA                                                                                                            >  1:1325324/1‑129
                                                                   TGACCGCTTCGCAAACCGAGCTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAA                                                                                                            <  2:1325324/129‑1
                                                                                                   GCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCCAGGCGGCCAGCAGGCCAAGGGCCAG                                                                                                                             >  1:1450780/1‑80
                                                                                                   GCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCCAGGCGGCCAGCAGGCCAAGGGCCAG                                                                                                                             <  2:1450780/80‑1
                                                                                                                                                     GGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCGCGGCAGCGGCATCGCGCACCTCGGTTTGCGAAGCGGTCATCATCTGGCTGGCCTGCAGCAGTACCGTGCCTTGTTCAA      <  2:884600/149‑1
                                                                                                                                                     GGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCGCGGCAGCGGCATCGCGCACCTCGGTTTGCGAAGCGGTCATCATCTGGCTGGCCTGCAGCAGTACCGGTCCTTGTTCAA      >  1:884600/1‑149
                                                                                                                                                       CCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCGCGGCAGCGGCATCGCGCACCTCGGTTTGCGAAGCGGTCATCATCTGGCTGGCCTGCAGCAGTACCGTGCCTTGTTCAACCA   >  1:1662371/1‑150
                                                                                                                                                        CCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCGCGGCAGCGGCATCGCGCACCTCGGTTTGCGAAGCGGTCATCATCTGGCTGGCCTGCAGCAGTACCGTGCCTTGTTCAACCAT  <  2:230045/150‑1
                                                                                                                                                                                                                                                                                                              
GCCAGCGAGCAAGCGCTGCAACGCATGGTTGAACAAGGCACGGTACTGCTGCAGGCCAGCCAGATGATGACCGCTTCGCAAACCGAGGTGCGCGATGCCGCTGCCGCGCAGGCCAAAACACTGCTCACGGTTGCCACCGTGCTGGCACTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5718099‑5718252
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCGCGGCAGCGGCATCGCGCACCTCGGTTTGCGAAGCGGTCATCATCTGGCTGGCCTGCAGCAGTACCGTGCCTTGTTCAACCAT  <  NC_002947/5718270‑5718123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.