New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5971256 =	70 (0.960)	4 (0.060)	4/234	NT	5.9%	coding (94/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	5971282 =	61 (0.890)					coding (68/2124 nt)	PP_5236	hypothetical protein

TCCAATAGGCTTTGCGCAGGCGTCAGGTATGACTTAGTGTTGTTGGGTAACCGCAGTTGCCATGGGATGGCACTGCGTCTTCTTTCAAATGGACTTGAGGTATTGCTCCGTGCAAACGCTCGCCCGCACGCACCAGGTAATGCGCGAACTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5971410‑5971256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtgcGTGCGGGCGAGCGTTTGCACGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAACAACACTAAGTCATACCTGACGCCTGCGCAAAGCCTATTGGATCCATTTTTGCCGAAC  >  NC_002947/5971282‑5971426                                                                                                                                                                                                                                                                                                              TCCAATAGGCTTTGCGCAGGCGTCAGGTATGACTTAGTGTTGTTGGGTAACCGCAGTTGCCATGGGATGGCACTGCGTCTTCTTTCAAATGGACTTGAGGTATTGCTCCGTGCAAACGCTCGCCCGCACGCACCAGGTAATGCGCGAACT                                                                                                                                                        >  1:1690171/1‑150   CAATAGGCTTTGCGCAGGCGTCAGGTATGACTTAGTGTTGTTGGGTAACCGCAGTTGCCATGGGATGGCACTGCGTCTTCTTTCAAATGGACTTGAGGTATTGCTCCGTGCAAACGCTCGCCCGCACGCACCAGGTAATGCGCGAACTGG                                                                                                                                                      >  1:346441/1‑150                                                                                                                            CCGCACGCACCAGGTAATGCGCGAACTGGTGCGTGCGGGCGAGCGTTTGCACGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAA                                                            <  1:1882261/119‑1                                                                                                                            CCGCACGCACCAGGTAATGCGCGAACTGGTGCGTGCGGGCGAGCGTTTGCACGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAA                                                            >  2:1882261/1‑119                                                                                                                                ACGCACCAGGTAATGCGCGAACTGGTGCGTGCGGGCGAGCGTTTGCACGGAGCAATAC                                                                                                                     <  1:1683017/58‑1                                                                                                                                ACGCACCAGGTAATGCGCGAACTGGTGCGTGCGGGCGAGCGTTTGCACGGAGCAATAC                                                                                                                     >  2:1683017/1‑58                                                                                                                                                     CTGGTGCGTGCGGGCGAGCGTTTGCACGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAACAACACT                                                     >  1:647237/1‑101                                                                                                                                                     CTGGTGCGTGCGGGCGAGCGTTTGCACGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAACAACACT                                                     <  2:647237/101‑1                                                                                                                                                     CTGGTGCGTGCGGGCGAGCGTTTGCAAGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAACAACACTAAGTCATACCTGACGCCTGCGCAAAGCCTATTGGATCCATTTTTGCCGA    >  1:1422101/1‑150                                                                                                                                                       GGTGCGTGCGGGCGAGCGGTTGCACGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAACAACACTGAGTCATACCTGACGCCTGCGCAAAGCCTATTGGATCCATTTTTGCCGAAC  >  1:1425560/1‑150                                                                                                                                                                                                                                                                                                              TCCAATAGGCTTTGCGCAGGCGTCAGGTATGACTTAGTGTTGTTGGGTAACCGCAGTTGCCATGGGATGGCACTGCGTCTTCTTTCAAATGGACTTGAGGTATTGCTCCGTGCAAACGCTCGCCCGCACGCACCAGGTAATGCGCGAACTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5971410‑5971256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtgcGTGCGGGCGAGCGTTTGCACGGAGCAATACCTCAAGTCCATTTGAAAGAAGACGCAGTGCCATCCCATGGCAACTGCGGTTACCCAACAACACTAAGTCATACCTGACGCCTGCGCAAAGCCTATTGGATCCATTTTTGCCGAAC  >  NC_002947/5971282‑5971426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.