New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6062575 =	74 (1.010)	4 (0.060)	4/240	NT	5.1%	coding (185/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	6062610 =	78 (1.100)					coding (150/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

CTTGCGGGCTACAACCTGGCCCGTGAATTTCGCAAGCTCGATGCGCAGACGCCGCTGTTGCTGATCACCGCCGACGATGGTCGTTCGTACTCCAAGCCGATGCTTTCCATGGGCTTTGCCAAGCAGAAGGACGCCGACGGCCTGTGCATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6062726‑6062575 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGA  >  NC_002947/6062610‑6062740                                                                                                                                                                                                                                                                                             CTTGCGGGCTACAACCTGGCCCGTGAATTTCGCAAGCTCGATGCGCAGACGCCGCTGTTGCTGATCACCGCCGACGATGGTCGTTCGTACTCCAAGCCGATGCTTTCCATGGGCTTTGCCAAGCAGAAGGACGCCGACGGCCCGTGCATG                                                                                                                                       >  2:236119/1‑150  TTGCGGGCTACAACCTGGCCCGTGAATTTCGCAAGCTCGATGCGCAGACGCCGCTGTTGCTGATCACCGCCGACGATGGTCGTTCGTACTCCAAGCCGATGCTTTCCATGGGCTTTGCCAAGCAGAAGGACGCCGACGGCCTGTGCATGG                                                                                                                                      >  1:128781/1‑150  TTGCGGGCTACAACCTGGCCCGTGAATTTCGCAAGCTCGATGCGCAGACGCCGCTGTTGCTGATCACCGCCGACGATGGTCGTTCGTACTCCAAGCCGATGCTTTCCATGGGCTTTGCCAAGCAGAAGGACGCCGACGGCCTGTGCATGG                                                                                                                                      >  1:958328/1‑150  TTGCGGGCTACAACCTGGCCCGTGAATTTCGCAAGCTCGATGCGCAGACGCCGCTGTTGCTGATCACCGCCGACGATGGTCGTTCGTACTCCAAGCCGATGCTTTCCATGGGCTTTGCCAAGCAGAAGGACGCCGACGGCCTGTGCATGG                                                                                                                                      >  2:8172/1‑150                                                                                                                   TTTGCCAAGCAGAAGGACGCCGACGGCCTGTGCATGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCC                     >  1:17296/1‑150                                                                                                                       CCAAGCAGAAGGACGCCGACGGCCTGTGCATGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGG                              <  1:1000848/137‑1                                                                                                                       CCAAGCAGAAGGACGCCGACGGCCTGTGCATGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGG                              >  2:1000848/1‑137                                                                                                                                      CCGACGGCCTGTGCATGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGA  <  2:17296/150‑1                                                                                                                                                                                                                                                                                             CTTGCGGGCTACAACCTGGCCCGTGAATTTCGCAAGCTCGATGCGCAGACGCCGCTGTTGCTGATCACCGCCGACGATGGTCGTTCGTACTCCAAGCCGATGCTTTCCATGGGCTTTGCCAAGCAGAAGGACGCCGACGGCCTGTGCATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6062726‑6062575 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGA  >  NC_002947/6062610‑6062740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.