New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3947957 =46 (0.630)8 (0.140) 8/192 NT 18.1% coding (136/1797 nt) PP_3483 type II secretion system protein
?NC_002947 3948042 = 37 (0.660)coding (51/1797 nt) PP_3483 type II secretion system protein

Only 100 of 122 total aligned reads displayed.

GTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCC  >  NC_002947/3947808‑3948105
                                                                                                                                                     |                                                                                                                                                    
cagggcccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgt                                                                                                                                                      <  1:675677‑M1/1‑1 (MQ=255)
   ggcccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCtt                                                                                                                                                   <  2:52758‑M1/4‑1 (MQ=255)
    tGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTGGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTTGGCCAGGAGGTCGCGGGGGTGGGCGGAAATTTTTGCTGGGTTCTTC                                                                                                                                                  >  1:3311‑M1/1‑150 (MQ=255)
     gCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGCGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCG                                                                                                                                                 >  1:1240571‑M1/1‑150 (MQ=255)
     gCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCG                                                                                                                                                 >  2:1469263‑M1/1‑150 (MQ=255)
     cccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcg                                                                                                                                                 <  2:1106228‑M1/6‑1 (MQ=255)
       cgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcgcg                                                                                                                                               >  2:1642551‑M1/143‑150 (MQ=255)
        gacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCgg                                                                                                                                              >  2:1199531‑M1/142‑150 (MQ=255)
           tCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCA                                                                                                                                           >  2:675677‑M1/1‑150 (MQ=255)
            acgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagctgagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCAt                                                                                                                                          >  1:564553‑M1/138‑150 (MQ=255)
              ggCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                        <  1:967052‑M1/150‑1 (MQ=255)
               gCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCC                                                                                                                                       >  2:1289546‑M1/1‑150 (MQ=255)
               atcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGcc                                                                                                                                       >  1:1455560‑M1/135‑150 (MQ=255)
                cccAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCC                                                                                                                                      >  2:1369535‑M1/1‑150 (MQ=255)
                    ggCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCCTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTC                                                                                                                                  <  1:101272‑M1/150‑1 (MQ=255)
                     tgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggcgatgccagaagcattcgatgcaaccacggaatctgcaaagcgtgcaccgaagTCTTCGCGGGCATGCCCgctac                                                                                                                                 <  2:268722‑M1/22‑3 (MQ=255)
                     tgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTcc                                                                                                                                 >  2:340749‑M1/129‑150 (MQ=255)
                     gcgcCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGTAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCC                                                                                                                                 <  1:1509674‑M1/150‑1 (MQ=255)
                     gcgcCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGACCGCTCC                                                                                                                                 >  1:211932‑M1/1‑150 (MQ=255)
                         cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGcc                                                                                                                                       >  1:1209297‑M1/125‑140 (MQ=255)
                         cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGcc                                                                                                                                       <  2:1209297‑M1/16‑1 (MQ=255)
                         cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCccacc                                                                                                                             <  1:230353‑M1/26‑2 (MQ=255)
                         cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCcaca                                                                                                                             >  1:532760‑M1/125‑150 (MQ=255)
                         cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCcaca                                                                                                                             >  2:808469‑M1/125‑150 (MQ=255)
                         cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCcaca                                                                                                                             >  2:1031908‑M1/125‑150 (MQ=255)
                         cGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACA                                                                                                                             >  1:804129‑M1/1‑150 (MQ=255)
                          gggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCATGCTAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                            <  1:418513‑M1/150‑1 (MQ=255)
                          gggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                            <  2:234322‑M1/150‑1 (MQ=255)
                          gggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCGTGCAGAGGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                            <  2:652021‑M1/150‑1 (MQ=255)
                             tGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTa                                                                                                                         >  1:1744846/1‑150 (MQ=255)
                               aaGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCgaagaa                                                                                                                              >  2:1932371‑M1/1‑137 (MQ=255)
                               aaGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCgaagaa                                                                                                                              <  1:1932371‑M1/143‑7 (MQ=255)
                                  gtgtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGTGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCA                                                                                                                               >  2:1799175‑M1/1‑139 (MQ=255)
                                   tgtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcac                                                                                                                   <  1:1488346/150‑1 (MQ=255)
                                       gggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGt                                                                                                               <  2:239724/150‑1 (MQ=255)
                                        ggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCTCACAGGTACATCACAGGTc                                                                                                              >  1:127768/1‑150 (MQ=255)
                                         gggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCt                                                                                                             <  1:113288/150‑1 (MQ=255)
                                         gggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCt                                                                                                             <  1:716273/150‑1 (MQ=255)
                                                    gccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGCTACGTCACAGGTCTCTTGGCTGCAt                                                                                                  >  2:717020/1‑150 (MQ=255)
                                                      caggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGTCTGCATAc                                                                                                >  2:1241371/1‑150 (MQ=255)
                                                       aggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACa                                                                                               >  1:1742891/1‑150 (MQ=255)
                                                         gCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATc                                                                                             <  2:1115418‑M2/150‑2 (MQ=255)
                                                           gTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcct                                                                                           <  1:1388061‑M2/150‑4 (MQ=255)
                                                            ttCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctg                                                                                          <  1:1041353‑M2/150‑5 (MQ=255)
                                                              ccAGGCAGTCGAGCAGGCGGTCTTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtg                                                                                        >  2:864347‑M2/1‑144 (MQ=255)
                                                               cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCACACAGATACATCACAGTTCTGTATGCTGCATACATcctgtgg                                                                                       <  2:184627‑M2/150‑8 (MQ=255)
                                                               cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAGGCCCGCTCCCACAGGatgtaggcagcccacagacctgtgatgtacctgtgg                                                                                       >  2:1641607‑M1/1‑114 (MQ=255)
                                                               agcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                       >  2:1226705‑M1/87‑150 (MQ=255)
                                                                 ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATtctgtggga                                                                                     <  2:799326‑M2/150‑10 (MQ=255)
                                                                   tgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGc                                                                                   >  1:33210‑M1/83‑150 (MQ=255)
                                                                         aGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAAGTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcat                                                                             >  2:637103‑M2/1‑133 (MQ=255)
                                                                          gCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG                                                                                                                           >  2:1579945‑M1/1‑103 (MQ=255)
                                                                                gcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTggg                                                                                                        >  1:1526417/1‑116 (MQ=255)
                                                                                gcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTggg                                                                                                        <  2:1526417/116‑1 (MQ=255)
                                                                                 cTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcga                                                                     >  2:1742891‑M2/1‑125 (MQ=255)
                                                                                  cggctagtggcTTGCAGACGGGCCTGGGCCAGGAGGCCGCGCGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTAGATCAGAGGTCTGTGGGATGCATACATcctgtgggcgcgggcatgcccgcgaa                                                                    >  1:799326‑M2/6‑124 (MQ=255)
                                                                                    gTCAGTTGCTTTCAGACGGGCGTGGGCCAGCAGGCCGCGTGGGTGGGCGGAAATTTTTGCTGGGTTCTTCTCGTGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaaga                                                                  >  1:916121‑M2/1‑122 (MQ=255)
                                                                                     tCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTCTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAGGTACATCACAGGTCTGTGGGCTGCGTACATcctgtgggggcgggcatgccggcgacgac                                                                 <  2:65140‑M2/150‑30 (MQ=255)
                                                                                     gcaGTCGCTTGCAGACGGGCCGGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCGGGGTTCTTCGCGGGCATGCCCGCTCCCACAGCatggatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaa                                                                 <  1:1641607‑M1/149‑59 (MQ=255)
                                                                                             ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggc                                                                               >  1:379183‑M1/1‑84 (MQ=255)
                                                                                             ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggc                                                                               <  2:379183‑M1/128‑45 (MQ=255)
                                                                                             ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcggg                                                                                <  2:1248033‑M1/127‑44 (MQ=255)
                                                                                             ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcggg                                                                                >  1:1248033‑M1/1‑84 (MQ=255)
                                                                                             ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACAt                                                                                                                      >  1:1114480/1‑89 (MQ=255)
                                                                                             ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACAt                                                                                                                      <  2:1114480/89‑1 (MQ=255)
                                                                                                 aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCTTCTCGCAAAGGAATATCTGGGGTCTGTGGGCTGCGTACATCCTGTGGGAGCGGGCATGCCCGCAAGGGAGTCGGttggggg                                                     >  1:1106228/1‑144 (MQ=255)
                                                                                                 aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACAAACTGTGGGAGCGGGCATGCCAGCGAAGGCGTGGGTgggggg                                                     >  1:268722/1‑145 (MQ=39)
                                                                                                    gccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgt                                                                                         >  2:571617‑M1/50‑111 (MQ=255)
                                                                                                    gccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgt                                                                                         <  1:571617‑M1/62‑1 (MQ=255)
                                                                                                     gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgtg                                                                                                          <  2:1568766/93‑1 (MQ=255)
                                                                                                     gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgtg                                                                                                          >  1:1568766/1‑93 (MQ=255)
                                                                                                     gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCAt                                                                                                  >  2:1162466/1‑101 (MQ=255)
                                                                                                     gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGCCGTCGGTGCAGGCTTTg                                                 >  2:1749480/1‑150 (MQ=255)
                                                                                                        ccTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtg                                                                                        >  2:1440233‑M2/1‑102 (MQ=255)
                                                                                                        ccTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtg                                                                                        <  1:1440233‑M2/108‑7 (MQ=255)
                                                                                                          tGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtggga                                                                                     >  2:405039‑M1/1‑71 (MQ=255)
                                                                                                          tGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtggga                                                                                     <  1:405039‑M1/109‑39 (MQ=255)
                                                                                                           gggCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGTCTGCa                                                                                                   <  1:645147/94‑1 (MQ=255)
                                                                                                                    gcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTgg                                                                                                         <  2:91466‑M1/46‑1 (MQ=255)
                                                                                                                    gcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTgg                                                                                                         >  1:91466‑M1/34‑79 (MQ=255)
                                                                                                                     gTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGTCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAGGACGTCTGTGCATGCTTTGCAGATTCCgggtgtgc                                 >  2:1645707/1‑145 (MQ=39)
                                                                                                                       cgatctggTAGGCACAAATTTTTGCTGCGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCAt                               <  2:380638/144‑1 (MQ=39)
                                                                                                                          ccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCggg                                                                                >  1:82769‑M1/28‑98 (MQ=255)
                                                                                                                          ccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCggg                                                                                <  2:82769‑M1/71‑1 (MQ=255)
                                                                                                                           ggggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                           <  2:1388061/150‑1 (MQ=255)
                                                                                                                           gaggTGGGCGGAATTTTCTGCTGGGTTCCTCGCGGGCACGCCCGCTCCCACAGGTACATCACAGGTAGGTGGGCTGCATACCTCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                           <  1:65140/148‑1 (MQ=255)
                                                                                                                                 ggCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                     >  2:1926561/1‑134 (MQ=255)
                                                                                                                                 ggCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                     <  1:1926561/134‑1 (MQ=255)
                                                                                                                                    ggAAGTTTTTGCTGGGTTCTTCGTGGGCATGCCCGCTGCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTgg                  <  1:1241371/150‑1 (MQ=255)
                                                                                                                                     gAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCt                    <  2:1531544/147‑1 (MQ=255)
                                                                                                                                     gAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCt                    >  1:1531544/1‑147 (MQ=255)
                                                                                                                                       aaTTTTTGCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGTACATCGCTGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCGGCGAAGACGTCGATGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCAt               <  2:1240571/150‑1 (MQ=38)
                                                                                                                                        aggggtGCTGGGTGCGGCGCGGGTAGGCGCGTGCGCAGGGGTACATCACTGTTGGGTGGGCTGCATACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATg              <  2:357273/145‑1 (MQ=255)
                                                                                                                                          ttttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc            <  1:1456508/150‑1 (MQ=255)
                                                                                                                                          ttttGCTGGGTTCTTCGCGGGCAGGCCCGCTCCCACAGGTATATCACAGGTCTGTGGGATGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc            <  1:949401/150‑1 (MQ=255)
                                                                                                                                          ttttGCTGGGTTCCTCGCGGCTATGCCCCCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATTCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc            <  1:807648/150‑1 (MQ=255)
                                                                                                                                              ggtGGGTTCTTCGCGGGGATGCGCGTGCCCACAGGTACATCGCAGGTCGGTGGGATGTATACATCCTGTGGGCGCGGGCATGCCCGCGAATACGTCGGGGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc        <  2:264223/148‑1 (MQ=255)
                                                                                                                                               cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcg                                                                                  >  1:349871‑M1/1‑34 (MQ=255)
                                                                                                                                               cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcg                                                                                  <  2:349871‑M1/75‑42 (MQ=255)
                                                                                                                                                    ttcttcGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATCCATgctgtgggagcgggcatgcccgcgaagaaccccgcaaaaatttccgcctacccccgcgacctcctggccccggcccgtctgcaagcgactgc  <  1:1641607‑M2/150‑93 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCC  >  NC_002947/3947808‑3948105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.