New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947957 =	46 (0.630)	8 (0.140)	8/192	NT	18.1%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3948042 =	37 (0.660)					coding (51/1797 nt)	PP_3483	type II secretion system protein

TTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTG  >  NC_002947/3947901‑3948190                                                                                                                                              |                                                                                                                                                     ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGCAGACGACGGTgg                                                                                                                                              >  2:230353/1‑149 (MQ=255)     aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCTTCTCGCAAAGGAATATCTGGGGTCTGTGGGCTGCGTACATCCTGTGGGAGCGGGCATGCCCGCAAGGGAGTCGGttggggg                                                                                                                                          >  1:1106228/1‑144 (MQ=255)     aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACAAACTGTGGGAGCGGGCATGCCAGCGAAGGCGTGGGTgggggg                                                                                                                                          >  1:268722/1‑145 (MQ=39)         gggCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGCCGTCGGTGCAGGCTTTg                                                                                                                                      >  2:1749480/1‑150 (MQ=255)           gCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCa                                                                                                                                    >  2:1638888/1‑150 (MQ=255)                     ggaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGGTAAAACAGGTACATCAAAGGTCTGTGGGCTGCATACATCCTGTGGGAGTGGGAATGCCCGCGAAGAGGTCGGTGGAGGGTTTGGAGAtgaagggg                                                                                                                          >  2:807648/1‑143 (MQ=255)                     ggaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                          <  1:1289546/150‑1 (MQ=255)                         gTCGCGGGGGTAGGCGGAACTTTTTGCTGGGTTCTTCGCGGGCATGCCCGATCACACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTAGGAGCAGGCATGACCGCGAAGTCGTAGGTGCGGGCTTTGCAGATTCCGGGGATGc                                                                                                                      >  2:403089/1‑150 (MQ=255)                         gTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGTCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAGGACGTCTGTGCATGCTTTGCAGATTCCgggtgtgc                                                                                                                      >  2:1645707/1‑145 (MQ=39)                           cgatctggTAGGCACAAATTTTTGCTGCGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCAt                                                                                                                    <  2:380638/144‑1 (MQ=39)                               ggggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                                                                                                                <  2:1388061/150‑1 (MQ=255)                               gaggTGGGCGGAATTTTCTGCTGGGTTCCTCGCGGGCACGCCCGCTCCCACAGGTACATCACAGGTAGGTGGGCTGCATACCTCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                                                                                                                <  1:65140/148‑1 (MQ=255)                                  gTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACATGTCTGTGGGGTGCATACATCCTGTGTGGCCGGGCCTGCCCGCGACGACGTCGGTGCAGGCTTTGCAGATTCCGGCGTTGCATcagatag                                                                                                             >  1:380638/1‑144 (MQ=255)                                     ggCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                          >  2:1926561/1‑134 (MQ=255)                                     ggCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                          <  1:1926561/134‑1 (MQ=255)                                        ggAAGTTTTTGCTGGGTTCTTCGTGGGCATGCCCGCTGCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTgg                                                                                                       <  1:1241371/150‑1 (MQ=255)                                         gAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCt                                                                                                         <  2:1531544/147‑1 (MQ=255)                                         gAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCt                                                                                                         >  1:1531544/1‑147 (MQ=255)                                           aaTTTTTGCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGTACATCGCTGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCGGCGAAGACGTCGATGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCAt                                                                                                    <  2:1240571/150‑1 (MQ=38)                                            aggggtGCTGGGTGCGGCGCGGGTAGGCGCGTGCGCAGGGGTACATCACTGTTGGGTGGGCTGCATACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATg                                                                                                   <  2:357273/145‑1 (MQ=255)                                              ttttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc                                                                                                 <  1:1456508/150‑1 (MQ=255)                                              ttttGCTGGGTTCTTCGCGGGCAGGCCCGCTCCCACAGGTATATCACAGGTCTGTGGGATGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc                                                                                                 <  1:949401/150‑1 (MQ=255)                                              ttttGCTGGGTTCCTCGCGGCTATGCCCCCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATTCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc                                                                                                 <  1:807648/150‑1 (MQ=255)                                              ttttGCTGGGGTCTGCGCGGGCATGGGCGCTCCCACAGGTACATCGCAGGTCTGTGGGCTGCATAGCTCCTGTCGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGc                                                                                                 <  2:127768/150‑1 (MQ=255)                                                  ggtGGGTTCTTCGCGGGGATGCGCGTGCCCACAGGTACATCGCAGGTCGGTGGGATGTATACATCCTGTGGGCGCGGGCATGCCCGCGAATACGTCGGGGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc                                                                                             <  2:264223/148‑1 (MQ=255)                                                      ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATCCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATGGAATGCTTCTGGCATGGCCTGCGACt                                                                                         >  1:757389/1‑150 (MQ=255)                                                               CGGGCACGCCCGCTCGCACAGGTGCATCACAGGTCTGTGGGCTTCATTCATCCTGTGGGTGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                                                >  1:1201374‑M1/1‑150 (MQ=255)                                                                GGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAggg                                                                               >  1:1369535‑M1/1‑150 (MQ=255)                                                                  GCATGCCCGCGCCCACAGGTCCATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgc                                                                             >  2:757389‑M1/1‑150 (MQ=255)                                                                    ATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGCCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTACGGTCAGGGgcgc                                                                           <  1:1753823‑M1/150‑1 (MQ=255)                                                                       cgctCTCCCACATGTACATCACAGGTTGGGGGGCTGCATCCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                                                        >  1:403089‑M1/5‑150 (MQ=255)                                                                       cccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                                            <  2:82769‑M2/27‑1 (MQ=255)                                                                       cccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                                            >  1:82769‑M2/72‑98 (MQ=255)                                                                       CCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCgtg                                                                        <  2:1235602‑M1/150‑2 (MQ=255)                                                                       CCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                                                        <  2:1024699‑M1/150‑1 (MQ=255)                                                                        CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATAGATCCTGTGGGAGCGGGCATGCCCGCGAAGGCGTCGGGGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCTGCTCAGGGGCGCGTCg                                                                       <  1:895220‑M1/150‑1 (MQ=255)                                                                        CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                          <  1:633071‑M1/99‑1 (MQ=255)                                                                        CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                          >  2:633071‑M1/1‑99 (MQ=255)                                                                        CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                                                      <  1:965010‑M1/119‑1 (MQ=255)                                                                        CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                                                      >  2:965010‑M1/1‑119 (MQ=255)                                                                        CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg                                                                       <  1:535369‑M1/150‑1 (MQ=255)                                                                          gctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCa                                                                     >  1:33210‑M2/69‑150 (MQ=255)                                                                           cgCCCACAGGTACATCAGAGGTATGTGGGCTGCATACTTTCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGG‑CGCGTCGCAgg                                                                   >  1:184627‑M1/3‑150 (MQ=255)                                                                            gCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAgg                                                                   >  1:1469263‑M1/2‑150 (MQ=255)                                                                             CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggc                                                                  >  1:1175903‑M1/1‑150 (MQ=255)                                                                              ccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct                                                                 >  2:1226705‑M2/65‑150 (MQ=255)                                                                              CCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct                                                                 >  2:535369‑M1/1‑150 (MQ=255)                                                                                acaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                                                      <  1:571617‑M2/49‑1 (MQ=255)                                                                                acaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                                                      >  2:571617‑M2/63‑111 (MQ=255)                                                                                ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTcc                                                                                       <  2:1431699‑M1/126‑1 (MQ=255)                                                                                ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTcc                                                                                       >  1:1431699‑M1/1‑126 (MQ=255)                                                                                   GGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTc                                                            <  2:89356‑M1/150‑1 (MQ=255)                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAg                                                      <  1:1024699/150‑1 (MQ=255)                                                                                               gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACt                                                                                         <  1:56959/109‑1 (MQ=255)                                                                                               gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACt                                                                                         >  2:56959/1‑109 (MQ=255)                                                                                                ccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGc                                                                                                                      <  2:91466‑M2/33‑1 (MQ=255)                                                                                                ccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGc                                                                                                                      >  1:91466‑M2/47‑79 (MQ=255)                                                                                                  tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                          >  2:226771/1‑73 (MQ=255)                                                                                                  tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                          <  1:226771/73‑1 (MQ=255)                                                                                                       gCTGCGGACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGcgccg                                        <  2:848795/150‑1 (MQ=255)                                                                                                       gCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg                                                               >  2:1781380/1‑127 (MQ=255)                                                                                                       gCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg                                                               <  1:1781380/127‑1 (MQ=255)                                                                                                          gcgtACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTGGGTGCATGCTTTTCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTa                                     <  2:402630/147‑1 (MQ=255)                                                                                                          gcctACATCCTGTGGTAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTa                                     <  1:182151/147‑1 (MQ=255)                                                                                                           cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGc                                                         <  1:551777/129‑1 (MQ=255)                                                                                                           cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGc                                                         >  2:551777/1‑129 (MQ=255)                                                                                                           cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAt                                    >  2:1128243/1‑150 (MQ=255)                                                                                                               cATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTccc                                <  2:301707/150‑1 (MQ=255)                                                                                                               cATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTccc                                <  1:1638888/150‑1 (MQ=255)                                                                                                                aTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTcccc                               >  1:52758/1‑150 (MQ=255)                                                                                                                    tgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgtg                           >  2:808469‑M2/27‑150 (MQ=255)                                                                                                                    tgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgtg                           >  2:1031908‑M2/27‑150 (MQ=255)                                                                                                                    tgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgtg                           >  1:532760‑M2/27‑150 (MQ=255)                                                                                                                    ggtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgtg                           <  1:230353‑M2/124‑1 (MQ=255)                                                                                                                        gtagcgggcatgcccgcgaagaCTTCGGTGCACGCTTTGCAGATTCCGTGGTTGCATCGAATGCTTCTGGCATCGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCa                       <  2:268722‑M2/128‑1 (MQ=255)                                                                                                                        ggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCa                       >  2:340749‑M2/23‑150 (MQ=255)                                                                                                                              ggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgtg                           <  2:1209297‑M2/124‑1 (MQ=255)                                                                                                                              ggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgtg                           >  1:1209297‑M2/17‑140 (MQ=255)                                                                                                                              ggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAt                 >  1:1455560‑M2/17‑150 (MQ=255)                                                                                                                               gcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtc                <  2:33210‑M2/135‑1 (MQ=255)                                                                                                                                 atgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCAGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgt              >  1:564553‑M2/14‑150 (MQ=255)                                                                                                                                     ccgcgaggaCGTCGGTGAAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGATCGGCCTGGGGTGGCGGCGTTTCTATTCTCCTGTTAGCAGTTGAtcgtcgtc          >  2:990657‑M2/10‑150 (MQ=255)                                                                                                                                     ccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgtcgtc          >  2:1199531‑M2/10‑150 (MQ=255)                                                                                                                                      cgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgtcgtcg         >  2:1642551‑M2/9‑150 (MQ=255)                                                                                                                                        cgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCggg       <  2:1106228‑M2/144‑1 (MQ=255)                                                                                                                                          aagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGcc     <  2:52758‑M2/146‑1 (MQ=255)                                                                                                                                             aCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTg  <  1:675677‑M2/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     TTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTG  >  NC_002947/3947901‑3948190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.