New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5050841	34 (0.470)	3 (0.040)	3/238	NT	6.8%	coding (268/645 nt)	PP_5687	MFS transporter
	?	NC_002947	= 5050869	50 (0.710)					coding (240/645 nt)	PP_5687	MFS transporter

GGGCGATATCGCGAGCCAGCCAAAATAGTTCCGACGAGATTCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCC  >  NC_002947/5050695‑5050984                                                                                                                                                   |                                                                                                                                                  gggCGATATCGCGAGCCAGCCAAAATAGTTCCGACGAGATTCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATg                                                                                                                                                <  2:1672170/150‑1 (MQ=255)                  agccaAAATAGTTCCGACGAGATTCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGaaaa                                                                                                                               <  2:556950/150‑1 (MQ=255)                     caAAATAGTTCCGACGAGATTCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCa                                                                                                                            <  1:1561615/150‑1 (MQ=255)                                   cgaGATTCATCGCTTAGATCAGCCCGCCCGACGTGACGATGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGtggaatgcttttcttgggggcattgcatccggaaata                                                                                                              <  2:175907‑M1/150‑38 (MQ=255)                                        ttCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑Tgc                                                                                                       <  1:988714/150‑1 (MQ=255)                                          cATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑Tgcag                                                                                                     >  2:612771/1‑150 (MQ=255)                                               cTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATaa                                                                                                <  1:1795857/150‑1 (MQ=255)                                                    aTCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCAt                                                                                           <  2:1685307/150‑1 (MQ=255)                                                    aTCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCAt                                                                                           <  2:1588402/150‑1 (MQ=255)                                                      cAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTg                                                                                         <  1:1779074/150‑1 (MQ=255)                                                         cccgcccgACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAg                                                                                      >  2:220308/1‑150 (MQ=255)                                                                        ccTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCCCTGAAATTATCACTATTTCCGCATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCtttt                                                                       <  1:1039371/149‑1 (MQ=255)                                                                             aTGACAATCAAAGTGACGCAGTGTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGTAAAGCAGTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCg                                                                  <  1:830464/150‑1 (MQ=255)                                                                                  aaTCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGtggaatgcttttcttgggggcattgcatccggaaatagtgataa                                                                                                       <  2:797594‑M1/110‑45 (MQ=255)                                                                                  aaTCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGtggaatgcttttcttgggggcattgcatccggaaatagtgataa                                                                                                       >  1:797594‑M1/1‑66 (MQ=255)                                                                                  aaTCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCaaa                                                             >  1:184279/1‑150 (MQ=255)                                                                                            aCGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAAtt                                                   >  2:1628520/1‑150 (MQ=255)                                                                                                     gCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGc                                                                                     >  2:1260780/1‑107 (MQ=255)                                                                                                     gCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGc                                                                                     <  1:1260780/107‑1 (MQ=255)                                                                                                        gCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGc                                           >  2:1577977/1‑146 (MQ=255)                                                                                                        gCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGc                                           <  1:1577977/146‑1 (MQ=255)                                                                                                        gCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGa                                       >  1:872562/1‑150 (MQ=255)                                                                                                         cccccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGTTGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGaa                                      >  2:1406998/1‑150 (MQ=255)                                                                                                          ccccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATc                                                                                                                >  2:525028/1‑77 (MQ=255)                                                                                                          ccccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATc                                                                                                                <  1:525028/77‑1 (MQ=255)                                                                                                           cccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAat                                    >  2:1472567/1‑150 (MQ=255)                                                                                                             caacgcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAatat                                  >  2:523736/1‑150 (MQ=255)                                                                                                              aacgcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATc                                 >  2:349715/1‑150 (MQ=255)                                                                                                                 gcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGc                                                           <  2:676906/121‑1 (MQ=255)                                                                                                                 gcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGc                                                           >  1:676906/1‑121 (MQ=255)                                                                                                                                  aaTTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCCTCCCAC‑‑GACCGGAGCGGGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGc             <  2:1506483/150‑1 (MQ=255)                                                                                                                                  aaTTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGc             <  1:349715/150‑1 (MQ=255)                                                                                                                                    ttATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCAccggaaatagtgataatttcagtgattgccgttgcgttgggggctgcaaactgcgtcactttgatt                                                     <  2:797594‑M2/110‑67 (MQ=255)                                                                                                                                    ttATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCAccggaaatagtgataatttcagtgattgccgttgcgttgggggctgcaaactgcgtcactttgatt                                                     >  1:797594‑M2/1‑44 (MQ=255)                                                                                                                                       tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                               >  2:1665988/1‑111 (MQ=255)                                                                                                                                       tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                               <  2:1102483/111‑1 (MQ=255)                                                                                                                                       tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                               <  1:1665988/111‑1 (MQ=255)                                                                                                                                       tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                               >  1:1102483/1‑111 (MQ=255)                                                                                                                                          cTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAgcg     >  1:1795737/1‑150 (MQ=255)                                                                                                                                           tATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCAccggaaatagtgataatttcagtgattgccgttgcgttgggggctgcaaactgcgtcactttgattgtcatgcatcgtcacgtcgggcgggctgatctaagcgatgaatctcg      <  2:175907‑M2/150‑114 (MQ=255)                                                                                                                                             tttCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCACGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGccc  <  1:612771/150‑1 (MQ=255)                                                                                                                                                ccGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGTAATGGCAAGaaa                                     >  1:1007681/1‑112 (MQ=255)                                                                                                                                                ccGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGaaa                                     <  2:1007681/112‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GGGCGATATCGCGAGCCAGCCAAAATAGTTCCGACGAGATTCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCC  >  NC_002947/5050695‑5050984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.