New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5050841	34 (0.470)	3 (0.040)	3/238	NT	6.8%	coding (268/645 nt)	PP_5687	MFS transporter
	?	NC_002947	= 5050869	50 (0.710)					coding (240/645 nt)	PP_5687	MFS transporter

TTCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACTTACCCCTATCGAAAGC  >  NC_002947/5050734‑5051016                                                                                                                                        |                                                                                                                                                      ttCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑Tgc                                                                                                                                       <  1:988714/150‑1 (MQ=255)   cATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑Tgcag                                                                                                                                     >  2:612771/1‑150 (MQ=255)        cTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATaa                                                                                                                                <  1:1795857/150‑1 (MQ=255)             aTCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCAt                                                                                                                           <  2:1685307/150‑1 (MQ=255)             aTCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCAt                                                                                                                           <  2:1588402/150‑1 (MQ=255)               cAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTg                                                                                                                         <  1:1779074/150‑1 (MQ=255)                  cccgcccgACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAg                                                                                                                      >  2:220308/1‑150 (MQ=255)                                 ccTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCCCTGAAATTATCACTATTTCCGCATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCtttt                                                                                                       <  1:1039371/149‑1 (MQ=255)                                      aTGACAATCAAAGTGACGCAGTGTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGTAAAGCAGTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCg                                                                                                  <  1:830464/150‑1 (MQ=255)                                           aaTCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCaaa                                                                                             >  1:184279/1‑150 (MQ=255)                                                     aCGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAAtt                                                                                   >  2:1628520/1‑150 (MQ=255)                                                              gCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGc                                                                                                                     >  2:1260780/1‑107 (MQ=255)                                                              gCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGc                                                                                                                     <  1:1260780/107‑1 (MQ=255)                                                                 gCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGc                                                                           <  1:1577977/146‑1 (MQ=255)                                                                 gCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGc                                                                           >  2:1577977/1‑146 (MQ=255)                                                                 gCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGa                                                                       >  1:872562/1‑150 (MQ=255)                                                                  cccccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGTTGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGaa                                                                      >  2:1406998/1‑150 (MQ=255)                                                                   ccccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATc                                                                                                                                                >  2:525028/1‑77 (MQ=255)                                                                   ccccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATc                                                                                                                                                <  1:525028/77‑1 (MQ=255)                                                                    cccAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAat                                                                    >  2:1472567/1‑150 (MQ=255)                                                                      caacgcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAatat                                                                  >  2:523736/1‑150 (MQ=255)                                                                       aacgcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATc                                                                 >  2:349715/1‑150 (MQ=255)                                                                          gcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGc                                                                                           <  2:676906/121‑1 (MQ=255)                                                                          gcaacgGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGc                                                                                           >  1:676906/1‑121 (MQ=255)                                                                                           aaTTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCCTCCCAC‑‑GACCGGAGCGGGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGc                                             <  2:1506483/150‑1 (MQ=255)                                                                                           aaTTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGc                                             <  1:349715/150‑1 (MQ=255)                                                                                             ttATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCAccggaaatagtgataatttcagtgattgccgttgcgttgggggctgcaaactgcgtcactttgatt                                                                                     <  2:797594‑M2/110‑67 (MQ=255)                                                                                             ttATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCAccggaaatagtgataatttcagtgattgccgttgcgttgggggctgcaaactgcgtcactttgatt                                                                                     >  1:797594‑M2/1‑44 (MQ=255)                                                                                                tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                                                               >  2:1665988/1‑111 (MQ=255)                                                                                                tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                                                               >  1:1102483/1‑111 (MQ=255)                                                                                                tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                                                               <  1:1665988/111‑1 (MQ=255)                                                                                                tCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGaa                                                                               <  2:1102483/111‑1 (MQ=255)                                                                                                   cTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAgcg                                     >  1:1795737/1‑150 (MQ=255)                                                                                                    tATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCAccggaaatagtgataatttcagtgattgccgttgcgttgggggctgcaaactgcgtcactttgattgtcatgcatcgtcacgtcgggcgggctgatctaagcgatgaatctcg                                      <  2:175907‑M2/150‑114 (MQ=255)                                                                                                      tttCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCACGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGccc                                  <  1:612771/150‑1 (MQ=255)                                                                                                         ccGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGTAATGGCAAGaaa                                                                     >  1:1007681/1‑112 (MQ=255)                                                                                                         ccGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGaaa                                                                     <  2:1007681/112‑1 (MQ=255)                                                                                                                  aTGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGt                      <  1:220308/150‑1 (MQ=255)                                                                                                                    gCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCa                    <  1:1628520/150‑1 (MQ=255)                                                                                                                      ccccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAAt                                                                              <  2:170083/90‑1 (MQ=255)                                                                                                                      ccccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAAt                                                                              >  1:170083/1‑90 (MQ=255)                                                                                                                      ccccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACt                  >  1:499663/1‑150 (MQ=255)                                                                                                                       cccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACtt                 >  1:1261311/1‑150 (MQ=255)                                                                                                                        ccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCTATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACTTa                >  2:1251114/1‑150 (MQ=255)                                                                                                                        ccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTgcg                                                        >  1:27337/1‑110 (MQ=255)                                                                                                                        ccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTgcg                                                        <  2:27337/110‑1 (MQ=255)                                                                                                                        ccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAAc                                                  >  1:963614/1‑116 (MQ=255)                                                                                                                        ccAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAAc                                                  <  2:963614/116‑1 (MQ=255)                                                                                                                           aGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACTTAccc             >  2:718006/1‑150 (MQ=255)                                                                                                                             aaaaGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGcccc                                 >  1:1386696/1‑128 (MQ=255)                                                                                                                             aaaaGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGcccc                                 <  2:1386696/128‑1 (MQ=255)                                                                                                                              aaaGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACTTACCCCTa          <  1:718006/150‑1 (MQ=255)                                                                                                                               aaGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATg                                                                             <  1:1799913/82‑1 (MQ=255)                                                                                                                               aaGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATg                                                                             >  2:1799913/1‑82 (MQ=255)                                                                                                                                aGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACTTACCCCTATc        <  2:184279/150‑1 (MQ=255)                                                                                                                                      ccACCGGACCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTACCCGCATAGCGTGATTGTTGGAGGTCAAGAAATATCTCTCTTGCGGCGAACAGTGCAACAAGCGCTCCTACCGCTCCGTCACTTACCCCTATCGAAAgc  <  1:1406998/150‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                      TTCATCGCTTAGATCAGCCCGCCCGACGTGACGCTGCATGACAATCAAAGTGACGCAGTTTGCAGCCCCCAACGCAACGGCAATCACTGAAATTATCACTATTTCCGGATGCAATGCCCCCAAGAAAAGCATTCCACCGGATCCTA‑C‑TGCAGCATAAGCCATTGGAGCGTGCAGCCCCTTTTTGTCGGCAAAGCGTCCAATTGGAATGGCAAGAAATATCTGGCTTGCGGCGAACAGTGCCACAAGCGCCCCTACCGCTCCGTCACTTACCCCTATCGAAAGC  >  NC_002947/5050734‑5051016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.