New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6140035	30 (0.410)	4 (0.060)	4/234	NT	12.4%	coding (1184/1473 nt)	cusB	CzcB family copper RND transporter membrane fusion protein
	?	NC_002947	= 6140040	28 (0.410)					coding (1189/1473 nt)	cusB	CzcB family copper RND transporter membrane fusion protein

GGTCGCCGAAGACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGC  >  NC_002947/6139886‑6140181                                                                                                                                                      |                                                                                                                                                   ggTCGCCGAAGACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGACAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAA                                                                                                                                                    <  2:1727124‑M1/150‑1 (MQ=255)   tCGCCGAAGACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGCCCCACCCGCGCCGAGCATTCGGTAGCGGCCTGCATGCCGGGCAGAACGTCGTCACACCCGTGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAgg                                                                                                                                                  <  1:1407089/150‑1 (MQ=255)   tCGCCGAAGACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAgg                                                                                                                                                  >  1:305891/1‑150 (MQ=255)   tCGCCGAAGACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAgg                                                                                                                                                  >  2:1075130/1‑150 (MQ=255)   tCGCCGAAGACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAgg                                                                                                                                                  <  2:1065330/150‑1 (MQ=255)           gACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGAGCGACTCCGAAGCAAGCCTCAAGGGTAttgag                                                                                                                                          >  1:640658‑M2/1‑145 (MQ=255)           gACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCAACGGGGCAATTCCTGATCGACTCCGAAGCAAGCCGCAAGGGTAttgag                                                                                                                                          >  1:449744‑M2/1‑145 (MQ=255)              cAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAAAGAAGTTTAAGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGCAAATCGTGGCATTCCGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGTTATTGAGGcc                                                                                                                                       >  1:1806805/1‑150 (MQ=255)                aGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGccac                                                                                                                                     <  1:1280753/150‑1 (MQ=255)                 ggCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGccac                                                                                                                                     <  2:475217/149‑1 (MQ=255)                 ggCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGccac                                                                                                                                     >  1:475217/1‑149 (MQ=255)                         ccGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATc                                                                                                                            <  1:1794022/150‑1 (MQ=255)                         atctccAATATAGGTCGTGCTAGCCCAGGAGAACGGCTGCCACTTCTCAATCTTCAAAGGCCTGCAGGCCGGGCAGAAACTCGTGGCATCCTTGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATc                                                                                                                            <  1:927338/146‑1 (MQ=255)                            cccAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGa                                                                                                                         >  1:302978/1‑150 (MQ=255)                            cccAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGa                                                                                                                         <  2:656930/150‑1 (MQ=255)                            cccAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGa                                                                                                                         <  1:1075130/150‑1 (MQ=255)                              cAATAGAGGTGGTGCTAGGCAAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGGCTGCAGGCCGGGCAGAAAGTCGTGGCATCAGGGCAATTCCTGATCGACTCCGAAGAAAGACTCAAGGGTATTGAGGCCACAAGAGCAtagagat                                                                                                                       >  2:927338/1‑144 (MQ=255)                                aTAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCa                                                                                                                     >  1:1470994/1‑150 (MQ=255)                                      gtggtgCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAg                                                                                                                                                   >  2:1244900/1‑114 (MQ=255)                                      gtggtgCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAg                                                                                                                                                   <  1:1244900/114‑1 (MQ=255)                                        ggtgCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCgcctgc                                                                                                             <  1:1208491/150‑1 (MQ=255)                                                         aCGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTACTGAGGCTACCACAGCATCGGTTTCACCGCCTGCCTCGCAAGCACCTGAAc                                                                                            <  2:221627/150‑1 (MQ=255)                                                           ggcggcCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAAccc                                                                                          >  2:360023/1‑150 (MQ=255)                                                            gcggcCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGt                                                                                                                                                <  1:1889555/95‑1 (MQ=255)                                                            gcggcCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGt                                                                                                                                                >  2:1889555/1‑95 (MQ=255)                                                                     tCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcggagtcgatcaggaattgcccggatgccac                                                                                                   <  2:1553627‑M2/131‑45 (MQ=255)                                                                     tCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcggagtcgatcaggaattgcccggatgccac                                                                                                   >  1:1553627‑M2/1‑87 (MQ=255)                                                                       gCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCAc                                                                                                                    <  2:1202097/112‑1 (MQ=255)                                                                       gCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCAc                                                                                                                    >  1:1202097/1‑112 (MQ=255)                                                                             ttGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcgga                                                                                                                              <  1:1401226‑M2/96‑18 (MQ=255)                                                                             ttGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcgga                                                                                                                              >  2:1401226‑M2/1‑79 (MQ=255)                                                                              tGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATg                                                                       <  1:916347/150‑1 (MQ=255)                                                                                      cTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTAttgag                                                                                                                                          >  2:456940‑M2/1‑70 (MQ=255)                                                                                      cTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTAttgag                                                                                                                                          <  1:456940‑M2/75‑6 (MQ=255)                                                                                            gCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGAAAGACTGGCGGGGAGTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACaa                                                         >  2:1719593/1‑150 (MQ=255)                                                                                                    gAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAgg                                                 <  2:302978/150‑1 (MQ=255)                                                                                                           gTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAgggtattgaggcttgcttcggagtcgatcaggaattgcccggatgccacgactttctgcccggcctgcaggcctttcaagattgcga                                                             >  1:1553627‑M1/1‑44 (MQ=255)                                                                                                           gTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAgggtattgaggcttgcttcggagtcgatcaggaattgcccggatgccacgactttctgcccggcctgcaggcctttcaagattgcga                                                             <  2:1553627‑M1/131‑88 (MQ=255)                                                                                                           gTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAg                                          >  1:162673/1‑150 (MQ=255)                                                                                                                 tCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCgtgt                                                                <  2:350319/122‑1 (MQ=255)                                                                                                                 tCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCgtgt                                                                >  1:350319/1‑122 (MQ=255)                                                                                                                  ccGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCa                                   <  1:1329770/150‑1 (MQ=255)                                                                                                                              tGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGc                       >  2:1857449/1‑150 (MQ=255)                                                                                                                              tGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGc                       >  1:90915/1‑150 (MQ=255)                                                                                                                               gATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAACCGCAGGCACCCAGCTGACCATCGACCACGGGcc                      >  1:499946/1‑150 (MQ=255)                                                                                                                                   caCTCCGAAGAAAGCCTTAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGTACCCATCTTACCATCGACCACGGGCCATTc                  <  2:689036/149‑1 (MQ=255)                                                                                                                                      tCCGAAGCAAGCCTCAAgggtattgaggcttgcttcggagtcgatcaggaattgcccggatgccacgactttctgcccggcctgcaggcctttcaa                                                                     >  2:1401226‑M1/1‑17 (MQ=255)                                                                                                                                      tCCGAAGCAAGCCTCAAgggtattgaggcttgcttcggagtcgatcaggaattgcccggatgccacgactttctgcccggcctgcaggcctttcaa                                                                     <  1:1401226‑M1/96‑80 (MQ=255)                                                                                                                                      tCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTc               >  2:1198425/1‑150 (MQ=255)                                                                                                                                        cGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCAc             >  1:564805/1‑150 (MQ=255)                                                                                                                                        cGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCATGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCAc             >  2:1927436/1‑150 (MQ=255)                                                                                                                                                  cTCAAtacccttgcggcttgcttcggagtcgatcaggaattgccccgttgccacgactttctgcccggcctgcaggcctttcaagattgcgacctggccgccgttctcctggcctagcaccacctctattgggcggaaacggccttggtc   >  1:449744‑M1/1‑5 (MQ=255)                                                                                                                                                  cTCAAtacccttgaggcttgcttcggagtcgctcaggaattgcccggatgccacgactttctgcccggcctgcaggcctttcaagattgcgacctggccgccgttctcctggcctagcaccacctctattgggcggaaacggccttggtc   >  1:640658‑M1/1‑5 (MQ=255)                                                                                                                                                  cTCAAtacccttgaggcttgcttcggagtcgatcaggaattgcccggatgccacgactttctgcccggcctgcag                                                                              >  2:456940‑M1/1‑5 (MQ=255)                                                                                                                                                  cTCAAtacccttgaggcttgcttcggagtcgatcaggaattgcccggatgccacgactttctgcccggcctgcag                                                                              <  1:456940‑M1/75‑71 (MQ=255)                                                                                                                                                   tCAAGGGTCTTTACGATACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGc  <  2:1806805/150‑1 (MQ=255)                                                                                                                                                   tCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGc  >  1:568619/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GGTCGCCGAAGACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGC  >  NC_002947/6139886‑6140181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.