mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 61 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,277 | 0 | C | T | 66.7% | 25.9 / 18.9 | 27 | intergenic (+468/+284) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,280 | 0 | C | T | 66.7% | 25.7 / 18.7 | 27 | intergenic (+471/+281) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 699,725 | 0 | A | G | 59.5% | 14.5 / 40.8 | 42 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,741,273 | 1 | . | C | 55.6% | 46.0 / 42.8 | 27 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,275 | 0 | A | G | 55.6% | 7.1 / 26.2 | 27 | intergenic (+466/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,299 | 0 | C | T | 52.8% | ‑6.5 / 46.0 | 36 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,301 | 0 | A | C | 52.8% | 5.5 / 45.5 | 36 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 52.8% | ‑6.7 / 56.2 | 36 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | C | 52.8% | 58.3 / 67.8 | 36 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,298 | 1 | . | T | 47.2% | 57.4 / 82.3 | 36 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,302 | 0 | A | G | 47.2% | ‑0.2 / 45.3 | 36 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,274 | 0 | A | C | 44.4% | 2.9 / 29.8 | 27 | intergenic (+465/+287) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 195,634 | 0 | C | T | 44.0% | 39.5 / 99.8 | 85 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 1,327,127 | 0 | C | T | 39.5% | 65.9 / 80.8 | 76 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 2,282,813 | 0 | T | G | 35.8% | 68.6 / 70.6 | 67 | intergenic (‑162/+67) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 195,559 | 0 | C | A | 35.5% | 95.4 / 57.1 | 62 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,988,961 | 0 | T | C | 35.0% | 64.6 / 32.0 | 40 | intergenic (+199/‑347) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,950 | 0 | C | T | 34.8% | 79.5 / 38.9 | 46 | intergenic (+188/‑358) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,951 | 0 | A | G | 34.8% | 82.8 / 38.0 | 46 | intergenic (+189/‑357) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,945 | 0 | C | A | 34.0% | 98.6 / 33.8 | 47 | intergenic (+183/‑363) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Marginal new junction evidence (lowest skew 10 of 212 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5816910 = | 35 (0.700) | 15 (0.350) | 11/230 | 3.1 | 33.6% | intergenic (+40/+89) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947 | 5816973 = | 29 (0.670) | intergenic (+103/+26) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
| * | ? | NC_002947 | 5477138 = | 47 (0.940) | 9 (0.260) | 8/184 | 3.1 | 22.4% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 30 (0.870) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | 1013201 = | 28 (0.560) | 13 (0.340) | 9/206 | 3.2 | 39.6% | intergenic (+26/+105) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| ? | NC_002947 | 1013289 = | 18 (0.470) | intergenic (+114/+17) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein | |||||
| * | ? | NC_002947 | 295700 = | 81 (1.620) | 11 (0.250) | 11/238 | 3.2 | 12.5% | intergenic (+47/+95) | PP_0241/PP_0242 | transporter/TetR family transcriptional regulator |
| ? | NC_002947 | 295759 = | 82 (1.830) | intergenic (+106/+36) | PP_0241/PP_0242 | transporter/TetR family transcriptional regulator | |||||
| * | ? | NC_002947 | 5099995 = | 68 (1.360) | 9 (0.220) | 9/216 | 3.3 | 14.8% | intergenic (+33/+120) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | 5100077 = | 48 (1.180) | intergenic (+115/+38) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator | |||||
| * | ? | NC_002947 | 4340085 = | 24 (0.480) | 8 (0.220) | 8/198 | 3.3 | 28.1% | intergenic (+26/‑305) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| ? | NC_002947 | 4340169 = | 23 (0.620) | intergenic (+110/‑221) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein | |||||
| * | ? | NC_002947 | = 6027969 | 64 (1.280) | 10 (0.240) | 9/224 | 3.5 | 16.0% | intergenic (‑57/+54) | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
| ? | NC_002947 | = 6027984 | 51 (1.210) | intergenic (‑72/+39) | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase | |||||
| * | ? | NC_002947 | 5506609 = | 86 (1.720) | 9 (0.230) | 8/208 | 3.5 | 11.8% | intergenic (+20/‑179) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease |
| ? | NC_002947 | 5506680 = | 68 (1.740) | intergenic (+91/‑108) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease | |||||
| * | ? | NC_002947 | 5537079 = | 59 (1.180) | 8 (0.200) | 8/212 | 3.6 | 15.8% | intergenic (+8/+95) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin |
| ? | NC_002947 | 5537155 = | 38 (0.950) | intergenic (+84/+19) | nadE/PP_4870 | NH(3)‑dependent NAD(+) synthetase/azurin | |||||
| * | ? | NC_002947 | 5109281 = | 53 (1.060) | 10 (0.210) | 10/250 | 3.6 | 16.8% | intergenic (+85/+54) | PP_4494/aroP‑II | LysR family transcriptional regulator/aromatic amino acid transport protein |
| ? | NC_002947 | 5109315 = | 49 (1.040) | intergenic (+119/+20) | PP_4494/aroP‑II | LysR family transcriptional regulator/aromatic amino acid transport protein | |||||