New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	80983 =	39 (0.800)	6 (0.130)	5/230	NT	14.0%	intergenic (+40/‑94)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	81062 =	38 (0.840)					intergenic (+119/‑15)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein

CCTCATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/81140‑80983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGG  >  NC_002947/81062‑81203                                                                                                                                                                                                                                                                                                              CCTCATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCACGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGC                                                                                                                                                        >  1:211027/1‑150      TCGAAGAACTCATTACCACAGCAATGATCACGACCAAACGTGCTGCGAAGGGCAGTCCTGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGCTGTATTCTTCGCGGGCGCGCCCGCc                                                                                                                                                   >  2:531462/1‑149       CGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTC                                                                                                                                                  <  1:146088/150‑1                                                                                        GCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAT                                                                                       <  1:1057295/128‑1                                                                                        GCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAT                                                                                       >  2:1057295/1‑128                                                                                          ATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCG                                                               >  1:762949/1‑150                                                                                          ATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTT                                                                                                         <  1:466563/108‑1                                                                                          ATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTT                                                                                                         >  2:466563/1‑108                                                                                                GCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTT                                                         <  2:762949/150‑1                                                                                                                                                       CCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGG  <  2:1166136/150‑1                                                                                                                                                                                                                                                                                                              CCTCATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/81140‑80983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGG  >  NC_002947/81062‑81203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.