New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	80983 =	39 (0.800)	6 (0.130)	5/230	NT	14.0%	intergenic (+40/‑94)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	81062 =	38 (0.840)					intergenic (+119/‑15)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein

GTACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAAC  >  NC_002947/80835‑81124                                                                                                                                                     |                                                                                                                                              gTACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTgg                                                                                                                                              <  1:1231760/150‑1 (MQ=255)       cccctttcgggatgatggaatagagctctgccttgggcttgcgggccgtcagttcaaaaatcgcctcatcgaagacctcgttaccatagccatcatcgcgaccaaacgtgctgcgaagggcagtcatgtgcgtgacactttcGGGAGCgg                                                                                                                                        <  2:1166136‑M1/8‑1 (MQ=255)            gCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCAGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGgcgcg                                                                                                                                   >  1:531462/1‑150 (MQ=255)                 ttGGACCTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCcgc                                                                                                                              <  1:616571/150‑1 (MQ=255)                   ggACCTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGgc                                                                                                                                      <  2:1033994/140‑1 (MQ=255)                   ggACCTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGgc                                                                                                                                      >  1:1033994/1‑140 (MQ=255)                        tGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAAt                                                                                                                       >  2:1245995/1‑150 (MQ=255)                         ggTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATa                                                                                                                      <  1:1245995/150‑1 (MQ=255)                          gTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGGTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATAc                                                                                                                     >  1:286061/1‑150 (MQ=255)                                       cgcTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAg                                                                                                        <  2:759369/150‑1 (MQ=255)                                                  cggAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATAc                                                                                                                     <  2:866362/126‑1 (MQ=255)                                                  cggAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATAc                                                                                                                     >  1:866362/1‑126 (MQ=255)                                                    gaagaaCCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGc                                                                                           >  1:1078162/1‑150 (MQ=255)                                                      agaaCCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCATGCACGGGCTTCGccc                                                                                         <  2:1078162/150‑1 (MQ=255)                                                      agaaCCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGccc                                                                                         <  2:119374/150‑1 (MQ=255)                                                           ccGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCtgtg                                                                                                                                               <  1:240838/91‑1 (MQ=255)                                                           ccGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCtgtg                                                                                                                                               >  2:240838/1‑91 (MQ=255)                                                              aaaaatcgcctcatcgaagacctcgttaccatagccatcatcgcgaccaaacgtgctgcgaagggcagtcatgtgcgtgacactttcGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTcgc                                                                                 <  2:762949‑M1/63‑1 (MQ=255)                                                                tgtgATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCgg                                                                               <  2:252680/150‑1 (MQ=255)                                                                    cgcctcatcgaagacctcgttaccatagccatcatcgcgaccaaacgtgctgcgaagggcagtcatgtgcgtgacactttcGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCAt                                                                           >  1:762949‑M1/82‑150 (MQ=255)                                                                       cgcgACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGcc                                                                        <  1:1086157/150‑1 (MQ=255)                                                                        gcgACCGGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCGAGTTTGCGACTTGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACATCTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGccc                                                                       <  2:174611/150‑1 (MQ=37)                                                                              tGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTccc                                                                 <  2:396552/150‑1 (MQ=255)                                                                                  aaCCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGaaa                                                             >  1:969126/1‑150 (MQ=255)                                                                                   aCCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAg                                                            <  2:286061/150‑1 (MQ=255)                                                                                            atagccatcatcgcgaccaaacgtgctgcgaagggcagtcatgtgcgtgacactttcGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGc                                                                         <  1:1057295‑M1/71‑1 (MQ=255)                                                                                            atagccatcatcgcgaccaaacgtgctgcgaagggcagtcatgtgcgtgacactttcGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGc                                                                         >  2:1057295‑M1/58‑128 (MQ=255)                                                                                             tCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGcac                                                  >  1:329988/1‑150 (MQ=255)                                                                                                ttCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGAGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGGCACGCACATg                                               >  1:363298/1‑150 (MQ=255)                                                                                                     ccGGGTTGATACCAGTCCACAGGCCTGGCTCGGGACTCGGGCCTCTGTGGGGGCGGGCGCGCCCGCGAAGAATACACCGCCGGGCCAGGCCCGGGCTTCGCCCGTGTTAGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGc                                          <  2:363298/150‑1 (MQ=255)                                                                                                     ccGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGAc                                             <  1:217848/147‑1 (MQ=255)                                                                                                     ccGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGAc                                             >  2:217848/1‑147 (MQ=255)                                                                                                        ggTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCt                                       <  2:969126/150‑1 (MQ=255)                                                                                                         gTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAgt                                                           <  2:432107/129‑1 (MQ=255)                                                                                                         gTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAgt                                                           >  1:432107/1‑129 (MQ=255)                                                                                                           tGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCg                                    >  1:832060/1‑150 (MQ=255)                                                                                                              aaacgtgctgcgaagggcagtcatgtgcgtgacactttcGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCAt                                                                           <  1:466563‑M1/69‑1 (MQ=255)                                                                                                              aaacgtgctgcgaagggcagtcatgtgcgtgacactttcGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCAt                                                                           >  2:466563‑M1/40‑108 (MQ=255)                                                                                                                 cAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCgg                                                                               <  2:138567/101‑1 (MQ=255)                                                                                                                 cAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCgg                                                                               >  1:138567/1‑101 (MQ=255)                                                                                                                  aaTCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACg                             >  2:206329/1‑150 (MQ=255)                                                                                                                     ccACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGttt                          <  2:329988/150‑1 (MQ=255)                                                                                                                         aGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGATTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTc                      >  2:943787/1‑150 (MQ=255)                                                                                                                                     ggACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCt          >  1:492436/1‑150 (MQ=255)                                                                                                                                       aCTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAt        <  1:206329/150‑1 (MQ=255)                                                                                                                                         tCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCg                                    >  2:1264742/1‑120 (MQ=255)                                                                                                                                         tCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCg                                    <  1:1264742/120‑1 (MQ=255)                                                                                                                                             gCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAAc  >  1:550979/1‑150 (MQ=255)                                                                                                                                             gCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTACGTCACCGGAAAGGGCTTTGCCCGTGTTCGCGGGCATGCACGATCCCGAAAGTGTCGCGCACTTGGCTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAAc  >  1:989013/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                              GTACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAAC  >  NC_002947/80835‑81124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.