New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	353104 =	52 (1.060)	3 (0.080)	3/198	NT	9.5%	intergenic (+68/+50)	hisF/cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	6009197 =	16 (0.410)					intergenic (+38/+44)	norM/PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein

CACTGCAGATTCGTTATCAAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/353272‑353104 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcacgcccgctcccacagGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGC  >  NC_002947/6009197‑6009231                                                                                                                                                                                                               CACTGCAGATTCGTTATCAAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGAGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCG                                                         >  1:527976/1‑150    TGCAGATTCGTTATCAAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGC                                                      <  1:682580/150‑1     GCAGATTCGTTATCAAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCA                                                     >  1:901350/1‑150              TTATCAAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTC                                            >  1:587247/1‑150               TATCAAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCC                                           <  2:1014891/150‑1                   AAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATCCCGAGCTTTACCACGCGCTGCTCGGCACGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCGCCCACA                                       >  1:548917/1‑150                    AACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAG                                      >  1:1142722/1‑150                    AACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAG                                      >  2:376256/1‑150                          CAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCG                                                         <  1:718309/125‑1                          CAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCG                                                         >  2:718309/1‑125                                                        GGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGC  <  1:376256/150‑1                                                                 GATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCGAAGCGGCCCcaa                                                            <  2:1108551/83‑4                                                                      TCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCC                                           <  1:70899/95‑1                                                                      TCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCC                                           >  2:70899/1‑95                                                                                                                   GTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGC          <  1:625215/83‑1                                                                                                                   GTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGC          >  2:625215/1‑83                                                                                                                                                                                                               CACTGCAGATTCGTTATCAAACCGGCAACAAGCTGGTGCTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/353272‑353104 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcacgcccgctcccacagGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGC  >  NC_002947/6009197‑6009231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.