| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 353104 = | 52 (1.060) | 3 (0.080) | 3/198 | NT | 9.5% | intergenic (+68/+50) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| ? | NC_002947 | 6009197 = | 16 (0.410) | intergenic (+38/+44) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein | |||||
GGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTC > NC_002947/6009048‑6009342 | gcgcgggtttggctgcgaccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑gg > 2:247664‑M1/118‑150 (MQ=255) ggCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTcc < 2:758453/150‑1 (MQ=255) tgtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCtgt < 1:737954/150‑1 (MQ=255) aggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGa > 2:864951‑M1/98‑150 (MQ=255) ggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAGACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGC‑GCAAT‑CCTGTGGGAGCgg < 1:964763/150‑1 (MQ=25) gTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTTTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCggg < 1:526944/150‑1 (MQ=255) aaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCgg > 1:1135093‑M1/92‑148 (MQ=255) aaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCgg < 2:1135093‑M1/57‑1 (MQ=255) aggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGc < 2:707808‑M1/55‑1 (MQ=255) aggcttcctggtcagcagaccgctaccgatagggcaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGc > 1:707808‑M1/91‑145 (MQ=255) ggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttgtagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGATCATTCA‑GGATTGC‑GCGGTCCCTGTGGGAgcgtgcgt > 1:1265798‑M1/90‑150 (MQ=255) gcgcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGC‑GCAAT‑CCTGTGGGAGCGGGCGt < 1:879544/150‑1 (MQ=25) gcgcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGC‑GCAAT‑CCTGTGGGAGCGGGCGt < 1:653467/150‑1 (MQ=25) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGC‑GCAAT‑CCTGTGGGAGCGGGc > 1:261629/1‑146 (MQ=25) ttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTgg > 2:650776‑M1/87‑137 (MQ=255) ttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTgg < 1:650776‑M1/51‑1 (MQ=255) cTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGC‑GCAAT‑CCTGTGGGAGCGGGCGTGcc < 1:1111977/150‑1 (MQ=25) ggtggtggggatactcggggataccgagctttaccacgcgctgctcggcaagaaccacggttgaagcaattggggccgcttcgcggcccttcgcgggcacgcccgctcccacagGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCcgc < 1:376256‑M2/36‑1 (MQ=255) cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCtgt < 1:1281382/130‑1 (MQ=255) cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCtgt > 2:1281382/1‑130 (MQ=255) cagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGa > 1:589491‑M1/76‑128 (MQ=255) cagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGa < 2:589491‑M1/53‑1 (MQ=255) cTTTGAGTGGCAGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGc > 1:45545/1‑134 (MQ=255) cTTTGAGTGGCAGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGc < 2:45545/134‑1 (MQ=255) aaaCGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGa > 1:130551/1‑93 (MQ=255) aaaCGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGa < 2:130551/93‑1 (MQ=255) gggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCgg < 1:680767‑M1/57‑1 (MQ=255) gggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCgg > 2:680767‑M1/59‑115 (MQ=255) gggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcatttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGa > 2:504477‑M1/59‑111 (MQ=255) gggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcatttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGa < 1:504477‑M1/53‑1 (MQ=255) ggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTgg > 1:22636‑M1/58‑108 (MQ=255) ggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTgg < 2:22636‑M1/51‑1 (MQ=255) gttgttGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCgg < 1:1101424/96‑1 (MQ=255) gttgttGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCgg > 2:1101424/1‑96 (MQ=255) ttgGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTccc > 2:389180/1‑96 (MQ=255) ttgGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTccc < 1:389180/96‑1 (MQ=255) gttgaagcaattggggccgcttcgcggcccttcgcgggcacgcccgctcccacagGTTTGCTGAGATCTCTGTGGGAGCGGGc > 2:625215‑M2/56‑83 (MQ=255) gttgaagcaattggggccgcttcgcggcccttcgcgggcacgcccgctcccacagGTTTGCTGAGATCTCTGTGGGAGCGGGc < 1:625215‑M2/28‑1 (MQ=255) GCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCtt > 2:1205529‑M1/1‑150 (MQ=255) GCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCtt < 1:1205529‑M1/150‑1 (MQ=255) CCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg < 2:1158271‑M1/150‑1 (MQ=255) CCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg < 2:818155‑M1/150‑1 (MQ=255) ACA‑GGATTGC‑GCGGTCCCTGTGCGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTc < 1:648244‑M1/150‑1 (MQ=255) | GGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGC‑GCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTC > NC_002947/6009048‑6009342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |