New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 403253	70 (1.430)	8 (0.190) +CGCCCGCTCCCACAGGAA	6/214	NT	16.0%	intergenic (‑53/+116)	msrA/PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
	?	NC_002947	5162647 =	28 (0.570)					intergenic (+122/+79)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

AGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/403112‑403253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCC  >  NC_002947/5162647‑5162695                                                                                                                                                 ||||||||||||||||||                                                   AGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCT                                                              <  1:756708/150‑1                     GCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAa                                            >  2:517440/1‑149                          GCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACA‑ACC‑TTtga                                   >  2:1136499/1‑147                                       CGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACA‑ACCTTTGAAACCTGTGCTGTA                       <  1:1136499/150‑1                                               GCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTG                 <  1:517440/150‑1                                                                             AACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCT‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCC  >  1:1267835/1‑134                                                                             AACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCT‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCC  <  2:1267835/134‑1                                                                                  AGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCAt      >  1:768273/1‑123                                                                                  AGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCAt      <  2:768273/124‑2                                                                                                                                                 ||||||||||||||||||                                                   AGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/403112‑403253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCC  >  NC_002947/5162647‑5162695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.