| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 403253 | 70 (1.430) | 8 (0.190) +CGCCCGCTCCCACAGGAA |
6/214 | NT | 16.0% | intergenic (‑53/+116) | msrA/PP_0337 | peptide methionine sulfoxide reductase MsrA/sensory box protein |
| ? | NC_002947 | 5162647 = | 28 (0.570) | intergenic (+122/+79) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase | |||||
CAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACAC > NC_002947/5162499‑5162785 | gaGGTAGACCTGGAAGCCCAGTCCTTAGACTCACCCTTTTCGGCTTCACCTGAAGCGGGAAACGCCGTCCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATca < 2:11681/149‑1 (MQ=255) gccaggcagggcctgttccgcagtgggcatgacgtttttgttcaccaggatttccgaacgcaggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggccctttcgcgggcacgcccgctcccacaggaaCAccacaa > 2:517440‑M2/143‑149 (MQ=255) ccTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGAc < 1:956342/150‑1 (MQ=255) ggAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑tt < 1:905445/150‑1 (MQ=255) gcagggcctgttccgcagtgggcatgacgtttttgttcaccaggatttccgaacgcaggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggccttcgcgggcacgcccgctcccacaggaaCACCACA‑acc‑tttga > 2:1136499‑M2/136‑147 (MQ=255) aaGCCAAGTTCTAAGCAACCCCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTga < 2:1249742/150‑1 (MQ=255) ccAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGaa < 2:128613/150‑1 (MQ=255) ccAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGaa > 2:1187552/1‑150 (MQ=255) gTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACtgt < 2:1155074/150‑1 (MQ=255) cgcagtgggcatgacgtttttgttcaccaggatttccgaacgcaggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggccttcgcgggcacgcccgctcccacaggaaCACCACA‑ACCTTTGAAACCTGTGCTGTa < 1:1136499‑M2/28‑1 (MQ=255) cacCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTga < 2:829999/132‑1 (MQ=255) cacCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTga > 1:829999/1‑132 (MQ=255) gcatgacgtttttgttcaccaggatttccgaacgcaggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggccctttcgcgggcacgcccgctcccacaggaaCACCACA‑ACCTTTGAAACCTGTGCTGTACCtgtg < 1:517440‑M2/34‑1 (MQ=255) tctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgg > 1:324372‑M2/1‑138 (MQ=255) ctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcggg > 2:415037‑M2/1‑137 (MQ=255) ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATcac < 2:777678/108‑1 (MQ=255) ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATcac > 1:777678/1‑108 (MQ=255) ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgggcaa > 2:805113‑M2/1‑134 (MQ=255) ttCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCAAATTAGCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgggcaag < 1:1243229‑M2/150‑18 (MQ=255) tGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgg > 1:1023692‑M2/1‑127 (MQ=255) tGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgg < 2:1023692‑M2/133‑7 (MQ=255) gCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAaga < 1:716400/150‑1 (MQ=255) cGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAagag < 2:195728/150‑1 (MQ=255) aaCGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGt < 2:550054/150‑1 (MQ=255) gCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgc < 2:1203165‑M2/136‑23 (MQ=255) gCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgc > 1:1203165‑M2/1‑114 (MQ=255) aacgcaggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggcctttcgcgggcacgcccgctcccacaggaaCACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGccc > 1:1267835‑M2/86‑134 (MQ=255) aacgcaggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggcctttcgcgggcacgcccgctcccacaggaaCACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGccc < 2:1267835‑M2/49‑1 (MQ=255) aCCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGGGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGgc < 1:1187552/150‑1 (MQ=255) aggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggccttcgcgggcacgcccgctcccacaggaaCACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGcat > 1:768273‑M2/80‑123 (MQ=255) aggaccatggccgttcctctgtgtttattcagtggggtaggggtttgggccttcgcgggcacgcccgctcccacaggaaCACCACA‑ACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGcat < 2:768273‑M2/45‑2 (MQ=255) tCCGGCGTTTCCCGTTTCTTTTTGTCTGTGTGCACGGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCtga < 1:6461/150‑1 (MQ=255) tCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCtga > 1:752501/1‑150 (MQ=255) ccGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGTCCCCATCGCGGGCTTGTCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCtgat < 2:875295/150‑1 (MQ=255) tttCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCa < 2:752501/150‑1 (MQ=255) tttCCCGCTTCTTTTTGTCCGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGCCC‑TTGAAAACTGGTCTGTACCTGTGGGAGCGGCCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCa < 1:1242118/150‑1 (MQ=38) ttCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCATAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAg > 1:80573/1‑150 (MQ=255) aTGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAAt < 2:282399/150‑1 (MQ=255) cccTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGTCCGTAACAGgcgc > 2:127780/1‑102 (MQ=255) cccTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGTCCGTAACAGgcgc < 1:127780/102‑1 (MQ=255) gcgGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCa > 2:752802/1‑150 (MQ=255) ggCTTGCCCGCTCCCAACGTATCACACCAGAGC‑TTCAGAAATGTGATGTACGGGTGGGAGCTGGCATGCCCGCGAAGAGGCCGTAACAGGCGAATGATGCATCAGCGCTCGAGAAGAAACATACTACCAATCGAGCACCCCGCACCAAAc < 2:1243229/150‑1 (MQ=255) ccGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgtttcccgcttcaggtgaagcaga < 2:677527‑M2/150‑107 (MQ=255) ccGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGTGAACGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCa > 1:4036/1‑150 (MQ=255) ccGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAAt < 2:678013/124‑1 (MQ=255) ccGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAAt > 1:678013/1‑124 (MQ=255) ccGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCa > 1:68173/1‑150 (MQ=255) gCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgttt > 1:1145070‑M2/1‑42 (MQ=255) gCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACctgtgggagcgggcaagcccgcgaaggggccggcgcatttcacacagacaaaaagaagcgggaaacgccggatggggtcggcgttt < 2:1145070‑M2/128‑87 (MQ=255) tCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAacac < 1:752802/150‑1 (MQ=255) | CAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACC‑TTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACAC > NC_002947/5162499‑5162785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |