| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 796828 = | 46 (0.940) | 9 (0.210) | 8/218 | NT | 20.2% | intergenic (+27/‑163) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein |
| ? | NC_002947 | 796898 = | 31 (0.720) | intergenic (+97/‑93) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein | |||||
ATGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/796992‑796828‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAC > NC_002947/796898‑797042 ATGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑G > 2:718337/1‑150 TGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GG > 2:870534/1‑150 GTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGAGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTAACAGTGGGA‑‑AC‑‑GGCCTT > 1:177995/1‑150 CATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTGTCGCGAT < 2:1256580/150‑1 GACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTG < 1:657064/123‑1 GACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTG > 2:657064/1‑123 TAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGC < 2:772054/106‑1 TAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGC > 1:772054/1‑106 CGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTC > 2:783584/1‑150 AAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGAT > 2:794089/1‑139 AAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGAT < 1:794089/139‑1 CCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGNTATACTNGCCGTCGCTTTTNTAGTCACCTGATGAGTCCTGAACTTCA < 1:783584/150‑1 ACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGTGT‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAA < 2:84683/89‑1 ACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAA > 1:84683/1‑89 TCCCACAGTAAGCCGATGCTGTACCTGTGGGAGTGT‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGAT > 2:390378/1‑131 TCCCACAGTAAGCCGATGCTGTACCTGTGGGAGTGT‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGAT < 1:390378/131‑1 CAGCAAGCCGATGCTGTACCTGTGGGAGTGT‑‑GGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTA > 2:749493/1‑150 GCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGG > 1:632435/1‑150 GCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAG < 1:787852/97‑1 GCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAG > 2:787852/1‑97 TGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGC < 1:749493/150‑1 CGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCA < 2:88639/150‑1 CGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCA < 2:415832/150‑1 GCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAC < 1:224519/150‑1 GCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAC < 1:224274/150‑1 ATGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGA‑‑GC‑‑GGCCTTGTGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/796992‑796828‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAC > NC_002947/796898‑797042 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |