New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	796828 =	46 (0.940)	9 (0.210)	8/218	NT	20.2%	intergenic (+27/‑163)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	796898 =	31 (0.720)					intergenic (+97/‑93)	PP_0681/PP_0682	hypothetical protein/inner membrane protein

ATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAC  >  NC_002947/796749‑797042                                                                                                                                                      |                                                                                                                                                 aTGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATc                                                                                                                                                  <  2:677063/150‑1 (MQ=255)  tGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCa                                                                                                                                                 <  2:1268416/150‑1 (MQ=255)          ggTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCgg                                                                                                                                         >  1:718337/1‑150 (MQ=255)                           gATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTTCGGAGCAGCCCCCGGGCttt                                                                                                                        >  1:1025869/1‑150 (MQ=255)                            aTTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCtttt                                                                                                                       >  2:874688/1‑150 (MQ=255)                               aCCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCt                                                                                                                    <  2:458387/150‑1 (MQ=255)                                ccAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTg                                                                                                                   >  1:607413/1‑150 (MQ=255)                                ccAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTg                                                                                                                   >  1:572143/1‑150 (MQ=255)                                 cAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGt                                                                                                                  <  2:78116/150‑1 (MQ=255)                                      tCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAg                                                                                                             <  2:561551/150‑1 (MQ=255)                                              agaCCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAACATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGtggctgg                                                                                                     <  2:611400/150‑1 (MQ=255)                                                         aTGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGACCCTCCCACAGGTATAGCATCGGCTTGCTGTGGGAGTGTTGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGcc                                                                                          <  1:726453/150‑1 (MQ=255)                                                               gggCCGCTGTGCGGCCCATCGCGACACAAGGCCGTTCCCACAGGAACAGCATTTGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCt                                                                                    <  1:1048671/150‑1 (MQ=39)                                                                 gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCttt                                                                                  >  1:812945/1‑150 (MQ=255)                                                                      tttGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAg                                                                             >  1:870534/1‑150 (MQ=255)                                                                       ttGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTAGCAGTCTATACTCGCCGTCGCTTTTTTAGt                                                                            <  1:874688/150‑1 (MQ=255)                                                                          cGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCGGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCAc                                                                         <  1:1124657/150‑1 (MQ=255)                                                                            gCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCt                                                                       <  2:572143/150‑1 (MQ=255)                                                                              ccATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATAc                                                                                               >  2:266383/1‑124 (MQ=255)                                                                              ccATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATAc                                                                                               <  1:266383/124‑1 (MQ=255)                                                                                ATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCtgatg                                                                   <  2:1256580‑M1/150‑1 (MQ=255)                                                                                    cgacacaaggccacactcccacagcaagccgatgctgtacctgtgggagcggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTc                                                               >  2:783584‑M2/67‑150 (MQ=255)                                                                                       CACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTc                                                                                       >  2:657064‑M1/1‑123 (MQ=255)                                                                                       CACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTc                                                                                       <  1:657064‑M1/123‑1 (MQ=255)                                                                                          aaggccacactcccacagcaagccgatgctgtacctgtgggagcggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCtgat                                                                    <  1:794089‑M2/79‑1 (MQ=255)                                                                                          aaggccacactcccacagcaagccgatgctgtacctgtgggagcggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCtgat                                                                    >  2:794089‑M2/61‑139 (MQ=255)                                                                                          AAGGCCGTTCCCACTGTTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCTCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAAc                                                         >  1:177995‑M1/1‑150 (MQ=255)                                                                                             GCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCta                                                                                                  >  1:772054‑M1/1‑106 (MQ=255)                                                                                             GCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCta                                                                                                  <  2:772054‑M1/106‑1 (MQ=255)                                                                                              ccacactcccacagcaagccgatgctgtacctgtgggagcggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGNTATACTNGCCGTCGCTTTTNTAGTCACCTGATGAGTCCTGAACTTCa                                                     <  1:783584‑M2/94‑1 (MQ=255)                                                                                              CCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCa                                                     >  2:870534‑M1/1‑150 (MQ=255)                                                                                               CGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCAt                                                    >  2:718337‑M1/1‑150 (MQ=255)                                                                                                actcccacagcaagccgatgctgtacctgtgggagtgtggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTaa                                                                                                                >  1:84683‑M2/55‑89 (MQ=255)                                                                                                actcccacagcaagccgatgctgtacctgtgggagtgtggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTaa                                                                                                                <  2:84683‑M2/35‑1 (MQ=255)                                                                                                  tcccacagtaagccgatgctgtacctgtgggagtgtggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCtgat                                                                    <  1:390378‑M2/79‑1 (MQ=255)                                                                                                  tcccacagtaagccgatgctgtacctgtgggagtgtggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCtgat                                                                    >  2:390378‑M2/53‑131 (MQ=255)                                                                                                    ccACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAAc                                               >  2:224274/1‑150 (MQ=255)                                                                                                    ccACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAAc                                               >  2:224519/1‑150 (MQ=255)                                                                                                      acaGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGt                                             >  1:539422/1‑150 (MQ=255)                                                                                                       cagcaagccgatgctgtacctgtgggagtgtggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTa                                            >  2:749493‑M2/48‑150 (MQ=255)                                                                                                                  tCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGtggctgg                                                                                                     >  2:658205/1‑82 (MQ=255)                                                                                                                  tCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGtggctgg                                                                                                     <  1:658205/82‑1 (MQ=255)                                                                                                                  tCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTCTCCTCGAAAAc                                 >  1:1018999/1‑150 (MQ=255)                                                                                                                     gCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAAcgcg                              >  1:88639/1‑150 (MQ=255)                                                                                                                     gCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATAGAACGTATCCTCGAAAAcgcg                              >  2:658351/1‑150 (MQ=255)                                                                                                                            gtgGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGAt                            >  2:1272457/1‑145 (MQ=255)                                                                                                                            gtgGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGAt                            <  1:1272457/145‑1 (MQ=255)                                                                                                                             tgGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGc                      <  1:658351/150‑1 (MQ=255)                                                                                                                               ggAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCtt                                                                                   <  2:1283960/87‑1 (MQ=255)                                                                                                                               ggAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCtt                                                                                   >  1:1283960/1‑87 (MQ=255)                                                                                                                                       gccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAg                                                                 <  1:787852‑M2/82‑1 (MQ=255)                                                                                                                                       gccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAg                                                                 >  2:787852‑M2/16‑97 (MQ=255)                                                                                                                                       gccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCgctgg            >  1:632435‑M2/16‑150 (MQ=255)                                                                                                                                           tgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGgctgc        <  1:749493‑M2/139‑1 (MQ=255)                                                                                                                                                cgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCa   <  2:415832‑M2/144‑1 (MQ=255)                                                                                                                                                cgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCa   <  2:88639‑M2/144‑1 (MQ=255)                                                                                                                                                 gcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAc  <  1:224519‑M2/145‑1 (MQ=255)                                                                                                                                                 gcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAc  <  1:224274‑M2/145‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 ATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGGTACAGCATCGGCTTGCTGTGGGAGTGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAC  >  NC_002947/796749‑797042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.