New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1212590 =	69 (1.410)	4 (0.090)	4/230	NT	6.9%	intergenic (‑118/+70)	PP_1060/PP_1061	glutamate synthase large subunit/ATP‑dependent DNA helicase
	?	NC_002947	1212688 =	44 (0.980)					coding (4277/4305 nt)	PP_1061	ATP‑dependent DNA helicase

TGGTCGAGGCGTCCGCACAGGAGCAGGAAAGCTGGCGGCAAAAACTGCTGCGCGACACCCTGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1212748‑1212590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctccAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCACTTTCGC  >  NC_002947/1212688‑1212836                                                                                                                                                                                                                                                                                                                      TGGTCGAGGCGTCCGCACAGGAGCAGGAAAGCTGGCGGCAAAAACTGCTGCGCGACACCCTGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGA                                                                                                                                                                >  2:842549/1‑150  GGTCGAGGCGTCCGCACAGGAGCAGGAAAGCTGGCGGCAAAAACTGCTGCGCGACAGCCTGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGCACGGAGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAA                                                                                                                                                               >  1:426980/1‑150       cGGCGTCCGCACAGGAGCAGGAAAGCTGGCGGCAAAAACTGCTGCGCGACACCCTGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGC                                                                                                                                                          >  2:946764/2‑150                                                                      TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCA                                                                                                                          >  1:699705/1‑119                                                                      TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCA                                                                                                                          <  2:699705/119‑1                                                                                AATACGGTAGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGT                                                                                 >  1:257309/1‑150                                                                                                                           CCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATA                                      <  2:257309/150‑1                                                                                                                                                        CCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGGCGTCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCACATCCGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCA         >  2:249006/1‑150                                                                                                                                                        CCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAGGCCGGTTGCCAATCACTGCCGGCc         >  2:617824/1‑149                                                                                                                                                        CCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCA         >  2:82276/1‑150                                                                                                                                                        CCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACC                                                                                           >  1:344362/1‑68                                                                                                                                                        CCCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACC                                                                                           <  2:344362/68‑1                                                                                                                                                         CCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCAC        >  2:98241/1‑150                                                                                                                                                         CCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCAC        >  1:118917/1‑150                                                                                                                                                         CCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCC                                                >  2:1215337/1‑110                                                                                                                                                         CCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCC                                                <  1:1215337/110‑1                                                                                                                                                         CCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGACCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGC                               >  2:489876/1‑127                                                                                                                                                         CCGCTCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGACCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGC                               <  1:489876/127‑1                                                                                                                                                             TCCAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCACTTTC    <  1:82276/150‑1                                                                                                                                                               CAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCACTTTCGC  <  2:847267/150‑1                                                                                                                                                                                                                                                                                                                      TGGTCGAGGCGTCCGCACAGGAGCAGGAAAGCTGGCGGCAAAAACTGCTGCGCGACACCCTGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGCACGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1212748‑1212590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctccAGGGTGTCGCGCAGCAGTTTTTGCCGCCAGCTTTCCTGCTCCTGTGCGGACGCCTCGACCAGATACGCGTAACGCCCGGCCATCCGCACCGCCACCGGTATCCCGTCGCGATACAGAAGCCGGTTGCCAATCACTGCCGGCACTTTCGC  >  NC_002947/1212688‑1212836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.