New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1311774 = | 45 (0.920) | 3 (0.070) +GCATCCACT |
3/232 | NT | 7.5% | intergenic (‑236/+42) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
? | NC_002947 | 3963035 = | 35 (0.710) | intergenic (+37/+80) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator |
GACGCCCTGCGCAAGCGGCGCGAAGATGGCCTGGCAATGCTGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1311908‑1311774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCC > NC_002947/3963035‑3963083 ||||||||| GACGCCCTGCGCAAGCGGCGCGAAGATGGCCTGGCAATGCTGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTG > 2:701489/1‑150 GCGCGAAGATGGCCTGGCAATGCTGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGC < 1:268488/150‑1 AGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCC < 1:701489/150‑1 ||||||||| GACGCCCTGCGCAAGCGGCGCGAAGATGGCCTGGCAATGCTGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1311908‑1311774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCC > NC_002947/3963035‑3963083 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |