New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1311774 = | 45 (0.920) | 3 (0.070) +GCATCCACT |
3/232 | NT | 7.5% | intergenic (‑236/+42) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
? | NC_002947 | 3963035 = | 35 (0.710) | intergenic (+37/+80) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator |
ATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCC > NC_002947/3962886‑3963181 | aTTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGAcg > 2:785367/1‑150 (MQ=255) gacgccctgcgcaagcggcgcgaagatggcctggcaatgctggagaaggccgccctgcgcctggaagccattcgcgtgctggtggctggctagcgcaggccccgcgccccctgtgggagcgggcgagcccgcgaagcatccactGCGGTg > 2:701489‑M2/145‑150 (MQ=255) ccGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTg > 2:971733/1‑150 (MQ=255) cTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCgg > 2:797636/1‑150 (MQ=255) cTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCgg > 2:399514/1‑150 (MQ=255) tATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGc > 1:825308/1‑150 (MQ=255) gcgcgaagatggcctggcaatgctggagaaggccgccctgcgcctggaagccattcgcgtgctggtggctggctagcgcaggccccgcgccccttgtgggagcgggcgagcccgcgaagcatccactGCGGTGGATGCCACCGGCTTTGc < 1:268488‑M2/23‑1 (MQ=255) ccGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGc < 1:1138731/150‑1 (MQ=255) ccGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGc < 1:971733/150‑1 (MQ=255) ccAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGgcgcgc > 1:644943/1‑150 (MQ=255) ccAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGgcgcgc > 1:1220894/1‑150 (MQ=255) aTCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAGCGTACGTGTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCCGCGTTCGCGGGCGCGCCCGc > 1:79701/1‑150 (MQ=38) tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGGATAGCGGTTTTTGGGGGGGCGTGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc < 1:797636/150‑1 (MQ=39) tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc > 1:448572/1‑150 (MQ=255) tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc < 2:1034475/150‑1 (MQ=255) tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc < 2:1063630/150‑1 (MQ=255) agaaggccgccctgcgcctggaagccattcgcgtgctggtggctggctagcgcaggccccgcgccccctgtgggagcgggcgagcccgcgaagcatccactGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTccc < 1:701489‑M2/49‑1 (MQ=255) gATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACtt < 1:680032/150‑1 (MQ=255) gcgGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAgcg > 1:1273293/1‑150 (MQ=255) aaaaaCTATCCGCTGTAACGCAAAGGCAACGCGGTTTATGGGGAAGCGGGCGACGCGGGGGAGGACACCGACTTTGCCCGTGTTCGCGGGCGCGCCCGCTACCACAGGAATGACACTGCGGAAATCTTCTCGCGTCAGCGCAAATAccaa > 2:204982/1‑148 (MQ=37) aaaCTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCgcgc > 2:677262/1‑150 (MQ=255) aaCTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGca > 2:1024352/1‑150 (MQ=255) aCTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTTCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGcat < 1:1108631/150‑1 (MQ=255) cTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGcatc < 2:825308/150‑1 (MQ=255) cTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGcatc > 1:296059/1‑150 (MQ=255) tGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATccacca > 2:1151290/1‑150 (MQ=255) cGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCCATACCGCGCATCATCCACCACCCTg < 2:79701/150‑1 (MQ=255) aaGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCAt < 2:448572/150‑1 (MQ=255) gCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGcc > 2:50619/1‑150 (MQ=255) cAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGccc < 2:115068/150‑1 (MQ=255) aaCGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACcgc < 2:641567/123‑1 (MQ=255) aaCGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACcgc > 1:641567/1‑123 (MQ=255) aaCGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAAGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGcccc > 1:247806/1‑150 (MQ=255) aCGCGGTTCTTGGGGACGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGGCACCGCCGCAAACTTCTCGCCTCAGCGCCAATACCGCGCCTCATCCACCACCCCGGCATGCCCCt > 2:118890/1‑150 (MQ=38) gcgGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTAACAGCGGCAAACTTCTCGCCTCAGCGCCAATACCTCGCAGCATCCACCACCCTGGCATGcgaatcg > 2:211505/1‑144 (MQ=38) gcgGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCGCCCACAGGAATGTCACCGCGGCAAACTTCTCGGCTCAGGGCCAATACAGCGCATCATCCACCACCCTGGCATGCCCCTCg > 1:307225/1‑150 (MQ=255) gggggAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGcc > 2:890496/1‑150 (MQ=255) ggggAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCg > 1:1242989/1‑150 (MQ=255) aGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAg < 2:296059/150‑1 (MQ=255) gCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCACGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGACACCTGGGCCTGGCAGCCACCACCCTGGCATGCCCCTCGCACGGCGCCGGCAGTTGCt > 2:359321/1‑150 (MQ=25) gACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTcc > 2:171423/1‑150 (MQ=255) | ATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCC > NC_002947/3962886‑3963181 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |