New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1534637 =	55 (1.120)	3 (0.060)	3/238	NT	5.2%	coding (2606/2820 nt)	secA	protein translocase subunit SecA
	?	NC_002947	1534671 =	57 (1.220)					coding (2640/2820 nt)	secA	protein translocase subunit SecA

CGGCCCAGCTTCTGGTCATTGCGTACTGGCGCCGAGGCTACCGCTACTTCGGCACCCTCCTCGCTCAGTTGCTCGCTTCCCAGGCCCGGTGCAGCGGCGTGCTGGAACTGCATGCGACTCGCCAGCTCTTCGGCCTCGCGGCGCAGGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1534787‑1534637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGGAAGCGAGCAACTGAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGG  >  NC_002947/1534671‑1534784                                                                                                                                                                                                                                                                           CGGCCCAGCTTCTGGTCATTGCGTACTGGCGCCGAGGCTACCGCTACTTCGGCACCCTCCTCGCTCAGTTGCTCGCTTCCCAGGCCCGGTGCAGCGGCGTGCTGGAACTGCATGCGACTCGCCAGCTCTTCGGCCTCGCGGCGCAGGCGA                                                                                                                     <  2:1165725/150‑1                                                                                                                    GACTCGCCAGCTCTTCGGCCTCGCGGCGCAGGCGAGTCGCATGAAGTTCCAGCACGCCGCTGCACCGGGCCTGGGAAGCGAGCAACTGAGCGAGGAGGGTGCCGAAGTAGCGGTATCCTCGGCGCCAGTAAGCAATGACGAGAAGCTGGG  >  2:182283/1‑150                                                                                                                       TCGCCAGCTCTTCGGCCTCGCGGCGCAGGCGAGTCGCATGCAGTTC                                                                                                       <  1:1049781/46‑1                                                                                                                       TCGCCAGCTCTTCGGCCTCGCGGCGCAGGCGAGTCGCATGCAGTTC                                                                                                       >  2:1049781/1‑46                                                                                                                                                                                                                                                                           CGGCCCAGCTTCTGGTCATTGCGTACTGGCGCCGAGGCTACCGCTACTTCGGCACCCTCCTCGCTCAGTTGCTCGCTTCCCAGGCCCGGTGCAGCGGCGTGCTGGAACTGCATGCGACTCGCCAGCTCTTCGGCCTCGCGGCGCAGGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1534787‑1534637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGGAAGCGAGCAACTGAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGG  >  NC_002947/1534671‑1534784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.