New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2343937 =	35 (0.710)	4 (0.090)	4/238	NT	12.4%	coding (412/456 nt)	soxR	DNA‑binding transcriptional regulator
	?	NC_002947	2343971 =	23 (0.490)					coding (378/456 nt)	soxR	DNA‑binding transcriptional regulator

GGACTGCCCACTGCGCAACCCCGAGGATGTGCTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2343974‑2343937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcaGTCCTCCAGCGACAGGCAACCGCAGCCAATGCAGTTGTCGAGGCTGTCGCGCAGTGCTTCCAGTGTGCGAATGCGGGCATTCAGGTCTTCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGG  >  NC_002947/2343971‑2344115                                                                                                                                                                                         GGACTGCCCACTGCGCAACCCCGAGGATGTGCTGGGCAGTCCTCCAGCGACAGGCAACCGCAGCCAATGCAGTTGTCGAGGCTGTCGCGCAGTGCTTCCAGTGTGCGAATGCGGGCATTCAGGTCTTCGCGCCAGGCCGTGGACATCTCG                                   >  2:868646/1‑150    CTGCCCACTGCGCAACCCCGAGGATGTGCTGGGCAGTCCTCCAGCGACAGGCAACCGCAGCCAATGCAGTTGTCGAGGCTGTCGCGCAGTGCTTCCAGTGTGCGAATGCGGGCATTCAGGTCTTCGCGCCAGGCCGTG                                            >  1:1108059/1‑138    CTGCCCACTGCGCAACCCCGAGGATGTGCTGGGCAGTCCTCCAGCGACAGGCAACCGCAGCCAATGCAGTTGTCGAGGCTGTCGCGCAGTGCTTCCAGTGTGCGAATGCGGGCATTCAGGTCTTCGCGCCAGGCCGTG                                            <  2:1108059/138‑1            TGCGCAACCCCGAGGATGTGCTGGGCAGTCCTCCAGCGACAGGCAACCGCAGCCAATGCAGTTGTCGAGGCTGTCGCGCAGTGCTTCCAGTGTGCGAATGCGGGCATTCAGGTCTTCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGC                        <  1:868646/150‑1                                  GGGCAGTCCTCCAGCGACAGGCAACCGCAGCCAATGCAGTTGTCGAGGCTGTCGCGCAGTGCTTCCAGTGTGCGAATGCGGGCATTCAGGTCTTCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGG  <  1:820372/150‑1                                                                                                                                                                                         GGACTGCCCACTGCGCAACCCCGAGGATGTGCTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2343974‑2343937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcaGTCCTCCAGCGACAGGCAACCGCAGCCAATGCAGTTGTCGAGGCTGTCGCGCAGTGCTTCCAGTGTGCGAATGCGGGCATTCAGGTCTTCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGG  >  NC_002947/2343971‑2344115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.