New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2365763	47 (0.960)	4 (0.080)	4/240	NT	7.8%	coding (156/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2365793	50 (1.060)					coding (186/906 nt)	lysR	transcriptional regulator LysR

AACTGTCCGTCCGCCACATCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2365612‑2365763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAGTCACCTGCTCCAGCCGCGCCAGTTCGCGGCTGACGGTCGGCTGCGAGGTGAACAGCAGGCGCGCCGCCCCCGTGACACTGCCAGCGGCCATGATG  <  NC_002947/2365793‑2365646                                                                                                                                                                                                                                                                                                              AACTGTCCGTCCGCCACATCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGC                                                                                                                                                        >  1:899027/1‑150     GTCCGTCCGCCACATCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGaga                                                                                                                                                    <  1:1285734/150‑4                                                                                CACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAG                                                                                                 >  1:104508/1‑126                                                                                CACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAG                                                                                                 <  2:104508/126‑1                                                                                             ACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC                                                                                                                                                      >  1:575208/1‑60                                                                                             ACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC                                                                                                                                                      <  2:575208/60‑1                                                                                                 TCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAA                                                                                                               >  1:217308/1‑95                                                                                                 TCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAA                                                                                                               <  2:217308/95‑1                                                                                                                                                       GCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAGTCACCTGCTCCAGCCGCGCCAGTTCGCGGCTGACGGTCGGCTGCGAGGTGAACAGCAGGCGCGCCGCCCCCGTGACACTGCCAGCGGCCATGATG  <  1:736741/150‑1                                                                                                                                                       GCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAGTCACCTGCTCCAGCCGCGCCAGTTCGCGGCTGACGGTAGGCTGCGAGGTGAACAGCAGGCGCGCCGCCCCCGGGACACTGCCAGCGGCCATGATG  <  2:1167355/150‑1                                                                                                                                                                                                                                                                                                              AACTGTCCGTCCGCCACATCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2365612‑2365763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAGTCACCTGCTCCAGCCGCGCCAGTTCGCGGCTGACGGTCGGCTGCGAGGTGAACAGCAGGCGCGCCGCCCCCGTGACACTGCCAGCGGCCATGATG  <  NC_002947/2365793‑2365646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.